SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55770 | AT | Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:20851039-20851566 REVERSE LENGTH=175 | SoyBase | E_val: 5.00E-16 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| GO:0046910 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity | SoyBase | N/A | ISS |
| PF04043 | PFAM | Plant invertase/pectin methylesterase inhibitor | JGI | ISS | |
| UniRef100_B9SAU2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase inhibitor, putative n=1 Tax=Ricinus communis RepID=B9SAU2_RICCO | SoyBase | E_val: 4.00E-27 | ISS |
| UniRef100_I1NB82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB82_SOYBN | SoyBase | E_val: 2.00E-125 | ISS |
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Glyma19g39980 not represented in the dataset |
Glyma19g39980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g37380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g212200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39980.1 sequence type=CDS gene model=Glyma19g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACGCTCTACAAAACTCTTCTCGGCGGCGTTGGTTCTCTGCGTGGTTGTGATGGCACACCAGACAGCAGCACAGGAACTAAAAGGAAAGAACCTAATCAACAAGGTTTGCACAATCACCCCGAGCAGAGACCTCTGCGTTGGGATCCTCTCATCGGACCCAATCAGAAGCCCTGACGCAGACCTCAAGGACTTGGCAGTTATCTCCCTTAGGGTTGCTGCCAGAAACGCCTCCGGCATCCTCAGCGAAGCCAAAATGTTGATCGATGACGACAACCTAGACCCCGACGTCCAACAAGGTTTGTCTGATTGCAAGGAGACAATCTTGGACGCCGAGAGCCAGCTCGAGGACACCATTGCATCCTTGTTGGTGGATTCCGACACCGACACACAGATTTGGCTCAAGGCTGCCTTGGCCGCCATCGACACCTGCGACGCTTCCATTCCCGGAGACGACGACGTTCTCTCCGTCAAGAGTGCCATGTTCCGCAGGCTGTGCAACATTGCCATTGCCATCACCAAGCGCTTGAACAAACCTCTTAAATTCTAA
>Glyma19g39980.1 sequence type=predicted peptide gene model=Glyma19g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERSTKLFSAALVLCVVVMAHQTAAQELKGKNLINKVCTITPSRDLCVGILSSDPIRSPDADLKDLAVISLRVAARNASGILSEAKMLIDDDNLDPDVQQGLSDCKETILDAESQLEDTIASLLVDSDTDTQIWLKAALAAIDTCDASIPGDDDVLSVKSAMFRRLCNIAIAITKRLNKPLKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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