Glyma19g39790 - SoyBase

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Report for Sequence Feature Glyma19g39790

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46333377
stop:	46337766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47790	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr2:19571102-19572946 REVERSE LENGTH=392	SoyBase	E_val: 0	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1188	KOG	WD40 repeat protein	JGI		ISS
PTHR22889	Panther	UNCHARACTERIZED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7KSP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7KSP6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NB53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB53_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39790

Paralog	Evidence	Comments
Glyma03g37180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g210500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39790

Limit To All Plant Sequences

>Glyma19g39790.1   sequence type=CDS   gene model=Glyma19g39790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCAGTGCGGCCATGGATGTCGAGGAGCAACCTTCACCCAACGCAAGCGACGTTAAACGCTTCGGCCTTAAAAACTCTATTCAAACCAACTTCGGCGACGACTATGTTTTCCAAATCGTCCCAAACGATGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAACTGTATTCACCTGTGGCGGGTCAGTATTATGGAGAATGCAAGGGTCACTCTGAAACCATCAATCAGATTTTGTTTTCGGGTCCTTCAAATCCCCATGTTTTGTGTTCCTGTTCTTCTGATGGCACCATTAGAGCTTGGGACATAAGGACTTTTCAGCAGGTTTCTTCCATCAATGCCGGTCCTTCTCAAGAGGTTTTCAGCTTCTGTATTGGAGGGACTGGTGGAAATTTAGTAGCCGCCGGGTGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCAAGTTGCATGCCTGGAGGACTCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCTAATGAACAAGGCAAGCTGATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATGCTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAACATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAATTATCAGAAGCTTTGGTGCTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCTCGTACTATAGCTTCTGAAAGTTGGAACTTGGATCATGTTGACTATTTCATTGATTGCCACTATTCCAGAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATACTGGTACTATGGGCTACTTTCCTGTAAATTACGAAGGAGTGGCTACAATTGGAGCTGCAGAAGCAATTCTTGAAGGAGGCCACGCAAGTGTTATTAGGAGTGTTTTACCCATGTCAACAATTCCTAGTGGACCTACTAATAGTCCTAGCCAAGGCATTTTCGGATGGTCGGGTGGAGAAGATGGTCGGCTGTGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCTTGGATTTCAAGCACTTTGACTATGAAGCCAGAAAGAACATGTAAGAAACACCGTCATCACCCCTACTAG

Predicted protein sequences of Glyma19g39790

Limit To All Plant Sequences

>Glyma19g39790.1   sequence type=predicted peptide   gene model=Glyma19g39790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METSAAMDVEEQPSPNASDVKRFGLKNSIQTNFGDDYVFQIVPNDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSETINQILFSGPSNPHVLCSCSSDGTIRAWDIRTFQQVSSINAGPSQEVFSFCIGGTGGNLVAAGCKSQILFWDWRNMKQVACLEDSHVDDVTQVHFVPNEQGKLISASVDGLICTFDATGDINDDDHLESVINMGTSIAKVGIFGENYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTIASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYEGVATIGAAEAILEGGHASVIRSVLPMSTIPSGPTNSPSQGIFGWSGGEDGRLCCWLSDDSSESNQSWISSTLTMKPERTCKKHRHHPY*

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