Glyma19g39740 - SoyBase

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Report for Sequence Feature Glyma19g39740

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46313566
stop:	46319818
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47760	AT	Annotation by Michelle Graham. TAIR10: asparagine-linked glycosylation 3 \| chr2:19565672-19568221 REVERSE LENGTH=438	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-1,3-mannosyltransferase activity	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG2762	KOG	Mannosyltransferase	JGI		ISS
PTHR12646	Panther	NOT56 - RELATED	JGI		ISS
PF05208	PFAM	ALG3 protein	JGI		ISS
UniRef100_G7KRV5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7KRV5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NB48	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NB48_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39740

Paralog	Evidence	Comments
Glyma03g37130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g210000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39740

Limit To All Plant Sequences

>Glyma19g39740.1   sequence type=CDS   gene model=Glyma19g39740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATCGGAGGCAGAAAACTGAAAAGCGGAGAAACGATGGCCGCTGAATCGGTGACGCAGTCGGCACCTCCGACGAGATCAAGAGGAAGAATCACTTTACTCGAAAACCCGAAAATACCCTTCGCACTTGCTCTTCTCTTTGCCGACGCCGTCCTCGTCTCTCTCATAATCGCATTCGTCCCCTATACAAAGATAGATTGGGACGCTTACATGTCACAGATTACCGGGTTTCTCGGTGGAGAACGAGATTACCGCAACCTCAAAGGCGACACTGGTCCTCTCGTCTACCCTGCTGGCTTTCTTTACATTTACTCTGCATTCAAGTATCTTACCGGTGGACAAGTTTACCCTGCTCAGATTCTCTTCGGAGTGTTGTATATCGTTAACTTAGCTATCGTTCTCGCCATCTATGTCAAAACCGATGTGGTTCCGTGGTGGGCACTTTGCTTGCTTTCTCTGTCGAAAAGGGTGCATTCTATCTTCGTGCTTCGTTTATTTAATGATTGTGTGGCCATGACACTTCTTCATGCTGCGTTGCTCTTGTTCGTGCACCGAAGGTGGAATCTGGGGTTGATTTTGTTTAGTGGAGCTGTTTCGGTGAAGATGAATGTTCTTCTTTATGCTCCTCCTTTGTTACTCCTCATGCTGAAGGCTATGGATATCAGCGGCGTGTTATTGGCATTATCTGGCGCAGCACTGGTTCAGATATTATTGGGGCTTCCTTTCCTGGTTTCATATCCAGTTGCATACATATCAAGAGCCTTCAATCTTGGCCGTGTCTTCATCCATTTCTGGTCCGTTAACTTCAAATTCATCCCTGAACCAGTATTTGTGTCCAGGGGATTTGCAATCCTTTTGTTGGCTGCTCACCTCATATTACTTGCTTCATTCGCACATTATAGTTGGTGCAAACATGAAGGAGGGCTTTGCAACTTCCTACATTCCAGATATGTCTTTATGAGAATGAAGTTTGCACTTTTCTTATCTTCCTCTTTTTCTAAGAAGGTTGGCAAGAGCAGTTCATCATCCCTCAGGATCCTTAATAAAGAACATATTGTGACAACTATGTTTGTTGGGAACTTCATTGGCATTGTATGTGCTCGGTCGTTGCATTATCAGTTCTATTCATGGTACTTCTATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCGTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGTGCTACTTCTTTGCCTTCACTTAATTATTCTCTTGGGTTTGTGGTCTTCTCCACCTGAGTATCCTTATGAAGAAAATAAACCATCCTCTTGCAAAAACAAATAG

Predicted protein sequences of Glyma19g39740

Limit To All Plant Sequences

>Glyma19g39740.1   sequence type=predicted peptide   gene model=Glyma19g39740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIGGRKLKSGETMAAESVTQSAPPTRSRGRITLLENPKIPFALALLFADAVLVSLIIAFVPYTKIDWDAYMSQITGFLGGERDYRNLKGDTGPLVYPAGFLYIYSAFKYLTGGQVYPAQILFGVLYIVNLAIVLAIYVKTDVVPWWALCLLSLSKRVHSIFVLRLFNDCVAMTLLHAALLLFVHRRWNLGLILFSGAVSVKMNVLLYAPPLLLLMLKAMDISGVLLALSGAALVQILLGLPFLVSYPVAYISRAFNLGRVFIHFWSVNFKFIPEPVFVSRGFAILLLAAHLILLASFAHYSWCKHEGGLCNFLHSRYVFMRMKFALFLSSSFSKKVGKSSSSSLRILNKEHIVTTMFVGNFIGIVCARSLHYQFYSWYFYSLPYLLWRTNYPTLLRLILFVGVELCWNIYPSNSLSSVLLLCLHLIILLGLWSSPPEYPYEENKPSSCKNK*

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