Glyma19g39720 - SoyBase

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Report for Sequence Feature Glyma19g39720

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46306266
stop:	46310451
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02910	AT	Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein \| chr1:655749-658125 REVERSE LENGTH=453	SoyBase	E_val: 0	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010270	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II oxygen evolving complex assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
PF11998	PFAM	Protein of unknown function (DUF3493)	JGI		ISS
UniRef100_I1NB45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB45_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SRY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F22D16.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRY4_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39720

Paralog	Evidence	Comments
Glyma03g37100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g209800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g39720

Limit To All Plant Sequences

>Glyma19g39720.2   sequence type=transcript   gene model=Glyma19g39720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAACTTGGCAATGGCTGTGGTTGCAGTGCAGCAATTCCAGTGCTTCACAGAATCAAATTGGAGAAATATAACAAGGCCATGCATTCCCCCTCACAGTTCACTTCTTCTACGTTCACGCAACAAGATTCAAATTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACACAAACTGCTGAATCTTGCGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCTGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACGATCTAAAATTTGGTACAATTCTCAATGATCCTGACTTGGCCTCCTTCAGAGTTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACTGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTATTGCGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATCGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTTGTGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTTTCTTTGGCTATGCAAAGAGCAGAGAGATTTCAAACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATTTGGGGAGAAGGTCAGGAAACAAAACTAGAGAAAAAAGGTTTTGGCCTAAAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGATTTTGAGAAGAGAGCACAGTCCATAACTGCAAAATCAAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTATCACCAGTGGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTTCACTTGGTGAAGACGTGTACATAATACTTCGCTTAGATGGACGGGTTCGAAGATCAGGGAAGGGTATGCCTGATTGGCAGCAAATTGTGAAGGAGCTACCACCAAAGGAAGCATTTTTAAGCAAGATAGAAAGATGAGAAGTATTGTTGAGAATTCAGACGGTTCAAATTTTAATTATTATTTTTTTTCCTGTCCCAAGTGTCTCCTGGTATCTCCGTCGTTGGTAATGTCCCACAGCAATATTTTTCTTGGCCATTAAACTAAACACTGGGCATCCATTCCTCCACGATCACTACAGACTTTTTTTTTGGGTATAATGTTTTACACTGAGATTTAAACCTATAACTTCATGTATATTTCAATTCCCACCACTAGGGCGACCCTAATGGTTCTATCACTACAGACAATTGCAAAGTAAATGTTACGAAAGAATATTAATATTGATAAAATATTTTGATGACAATTCTATGTTGTACTTAATTCGTCAAAAATAAAAATGATGTACTTAAGCGAAGATGAATATTTTTAGACAGGTGAATGCATCTGAATTTAGTAACTCT

Coding sequences of Glyma19g39720

Limit To All Plant Sequences

>Glyma19g39720.1   sequence type=CDS   gene model=Glyma19g39720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGTTGCAGTGCAGCAATTCCAGTGCTTCACAGAATCAAATTGGAGAAATATAACAAGGCCATGCATTCCCCCTCACAGTTCACTTCTTCTACGTTCACGCAACAAGATTCAAATTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACACAAACTGCTGAATCTTGCGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCTGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACGATCTAAAATTTGGTACAATTCTCAATGATCCTGACTTGGCCTCCTTCAGAGTTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACTGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTATTGCGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATCGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTTGTGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTTTCTTTGGCTATGCAAAGAGCAGAGAGATTTCAAACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATTTGGGGAGAAGGTCAGGAAACAAAACTAGAGAAAAAAGGTTTTGGCCTAAAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGAGAGCACAGTCCATAACTGCAAAATCAAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTATCACCAGTGGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTTCACTTGGTGAAGACGTGTACATAATACTTCGCTTAGATGGACGGGTTCGAAGATCAGGGAAGGGTATGCCTGATTGGCAGCAAATTGTGAAGGAGCTACCACCAAAGGAAGCATTTTTAAGCAAGATAGAAAGATGA

>Glyma19g39720.2   sequence type=CDS   gene model=Glyma19g39720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGTTGCAGTGCAGCAATTCCAGTGCTTCACAGAATCAAATTGGAGAAATATAACAAGGCCATGCATTCCCCCTCACAGTTCACTTCTTCTACGTTCACGCAACAAGATTCAAATTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACACAAACTGCTGAATCTTGCGTCAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCTGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACGATCTAAAATTTGGTACAATTCTCAATGATCCTGACTTGGCCTCCTTCAGAGTTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCATTTACTGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTATTGCGTGCAATTAATGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATCGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTTGTGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTTTCTTTGGCTATGCAAAGAGCAGAGAGATTTCAAACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATTTGGGGAGAAGGTCAGGAAACAAAACTAGAGAAAAAAGGTTTTGGCCTAAAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGATTTTGAGAAGAGAGCACAGTCCATAA

Predicted protein sequences of Glyma19g39720

Limit To All Plant Sequences

>Glyma19g39720.1   sequence type=predicted peptide   gene model=Glyma19g39720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVAVQQFQCFTESNWRNITRPCIPPHSSLLLRSRNKIQISLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTLFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALREYDLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTVPRLLRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFQTELLRRGVLLVPVIWGEGQETKLEKKGFGLKPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPKEAFLSKIER*

>Glyma19g39720.2   sequence type=predicted peptide   gene model=Glyma19g39720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVAVQQFQCFTESNWRNITRPCIPPHSSLLLRSRNKIQISLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTLFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALREYDLKFGTILNDPDLASFRVLPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTVPRLLRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFQTELLRRGVLLVPVIWGEGQETKLEKKGFGLKPKAAEALPSIGILRREHSP*

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