SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03200 | AT | Annotation by Michelle Graham. TAIR10: catalytics | chr4:1408296-1412566 FORWARD LENGTH=818 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG2244 | KOG | Highly conserved protein containing a thioredoxin domain | JGI | ISS | |
| PTHR12145 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR12145:SF11 | Panther | CONSERVED HYPOTHETICAL PROTEIN | JGI | ISS | |
| PF03190 | PFAM | Protein of unknown function, DUF255 | JGI | ISS | |
| UniRef100_A0F0B0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cold-induced thioredoxin domain-containing protein n=1 Tax=Ammopiptanthus mongolicus RepID=A0F0B0_9FABA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NB27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB27_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g39560 not represented in the dataset |
Glyma19g39560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g208100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39560.2 sequence type=transcript gene model=Glyma19g39560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAAGCAAAGAAAAGGTTGTGGATGTCGAACCGTTGAGAAGGGAAGAGGTAGACATGGGAACTCAGCTCATACTTGAAACTTGCTCTGGAAGATGCAGTTATTAGCTATTACTCATACATAATTGATAACCCTTCTCTTCTTCAAACTTGAAACTCTCACACTCAAAGTCCTCTCCATGGCATCATCTCATTCCCACATACACATTAATCGACTCGCTTCCGAGCAGAGCCCCTACCTTCTCCAACACGCACATAACCCTGTTCATTGGTATCCCTGGGGTGAAGAAGCCTTCGCCGAAGCGCGCCGCCGAGACGCGCCTATCTTCTTGTCAATTGGTTACAGCACTTGTCACTGGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTGTACATGTCGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGAAAGTTAAAAGAAGCTTGGGATAGTAAGAGGGATATGCTGATTAAGCGTGGATCATATGCAATTGAACAACTTTCTGAGGCAATGTCTGCTAGTTCAGATTCTGATAAACTGCCTGATGGGGTTCCAGCTGATGCGTTACGCCTATGCTCGGAGCAGCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGTTGGAAGATACGGGGAAGTTGGATGGAGCTAATAGAATTCAGAAAATGGTTTTCTTTAGCTTGCAATGCATGGCAAAAGGCGGGATGCATGATCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATCACGGGATATCCTTGATTATTTAAGGAGAGATATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCAGAGACTGAAGGAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAGGCAAAGAGGTTGCAGACATACTTGGAGAGCATGCTGCTCTTTTCGAGGAGCACTATTACATCAAGCAATCAGGTAACTGTAACCTATCTGGAATGAGTGATCCTCACGATGAATTCAAGGGAAAGAATGTCCTGATTGAGAGAAAGGAACCTTCAGAACTGGCATCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAGTGCAGGCATAAGTTGTTTGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGGTTATTGTATCATGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAGATTCTCAAGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAAGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAACAGCTTTACAATGTGGAAACTCACAGGCTACACCATAGTTTCAGACATTCTCCGTCTAAAGCTCCTGCTTTCTTGGATGATTATGCTTTTCTGATTTCTGGATTGCTGGATCTCTATGAATTTGGTGGTGGAATTAACTGGCTTCTATGGGCCATTGAATTGCAGGAAACCCAGGATGCCTTGTTTCTTGATAGGACAGGAGGTGGATATTTCAATAATACAGGAGAAGATTCTTCCGTTCTCCTCCGGGTAAAGGAAGACCATGATGGTGCAGAACCCTCAGGAAACTCAGTTTCTGCTATAAATCTTATAAGATTGGCTTCCATGGTTGCTGGAAGTAAGGCTGAGCACTATAAGCAAAATGCAGAACATCTATTGGTCTGTAAAACCCTTTTCCCCTTTCCTCCTAAAAGCTGTTCTTGTTTATGTGCTAACAATGGTGGGATCAGGGATGGGGGTTATTAGAGGAAATCTGTTACTAGACCACTGAGCCAGTTGCAATTGACTAGAATTCCCTTCAAATGGTAATGCAGGCCGTTTTTGAGAGAAGGTTGAAAGATATGGCTATGGCAGTGCCTCTAATGTGTTGTGCAGCAGACATGTTGCATGTACCTTCACGGAAGCAAGTGGTTGTGGTTGGTGAAAGGACTTCTGGGGACTTTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTAAATAACAGCAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTTGACAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGCCCCCCTGTCACTGATCATTCGTCACTTGAATCTTTGCTCTCCAAAAAACCTTCCTCTTCATTAACATAAGCTATTGGTTCTGATTAGTAGGAAAAATAGTAGCTCCCTCTTAGAGATCCTCCTTTTCGTCTACAGAACTAGTTGGTTCTGACTTCTCTGTCAAATAAACTAATAAAGGTAGGTAATATTCTCCGTTGAGTTGAGGGATTGATGCATATCCTTTTCGTTTGCCTGTGCTCAACAAGCCATAATTTTTCTTTAAATGTGATACAGAATGATGGAATCATGGATATATAATTGTATATGTATTATGTAGGCAATGGTTGAAATAATTATCTTCTCCAGTTGGGGTCTGTTCTCATATGTTTGTACTTCATTTTTTTCTCGTTGAACTGGCACAATAAAGTCATGATGCCACGGCTAAGATATCCTTCATGTCTGTTTGTTCGTGCATATGTTGTAGGAAGCTCAAAAGGTTTTCCAATCTGAGACATTCTTCTGTTTTCGAGTCTTTTCTTGTTCTGTATGATTGGATGTGTATTTTTTTATTTATAGTATTAAAAATTGTAGGTTGCACACACTGAATGATATATAAAAATTTCTTATTTTTCGT
>Glyma19g39560.1 sequence type=CDS gene model=Glyma19g39560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCATCTCATTCCCACATACACATTAATCGACTCGCTTCCGAGCAGAGCCCCTACCTTCTCCAACACGCACATAACCCTGTTCATTGGTATCCCTGGGGTGAAGAAGCCTTCGCCGAAGCGCGCCGCCGAGACGCGCCTATCTTCTTGTCAATTGGTTACAGCACTTGTCACTGGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTGTACATGTCGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGAAAGTTAAAAGAAGCTTGGGATAGTAAGAGGGATATGCTGATTAAGCGTGGATCATATGCAATTGAACAACTTTCTGAGGCAATGTCTGCTAGTTCAGATTCTGATAAACTGCCTGATGGGGTTCCAGCTGATGCGTTACGCCTATGCTCGGAGCAGCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGTTGGAAGATACGGGGAAGTTGGATGGAGCTAATAGAATTCAGAAAATGGTTTTCTTTAGCTTGCAATGCATGGCAAAAGGCGGGATGCATGATCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATCACGGGATATCCTTGATTATTTAAGGAGAGATATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCAGAGACTGAAGGAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAGGCAAAGAGGTTGCAGACATACTTGGAGAGCATGCTGCTCTTTTCGAGGAGCACTATTACATCAAGCAATCAGGTAACTGTAACCTATCTGGAATGAGTGATCCTCACGATGAATTCAAGGGAAAGAATGTCCTGATTGAGAGAAAGGAACCTTCAGAACTGGCATCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAGTGCAGGCATAAGTTGTTTGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGGTTATTGTATCATGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAGATTCTCAAGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAAGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAACAGCTTTACAATGTGGAAACTCACAGGCTACACCATAGTTTCAGACATTCTCCGTCTAAAGCTCCTGCTTTCTTGGATGATTATGCTTTTCTGATTTCTGGATTGCTGGATCTCTATGAATTTGGTGGTGGAATTAACTGGCTTCTATGGGCCATTGAATTGCAGGAAACCCAGGATGCCTTGTTTCTTGATAGGACAGGAGGTGGATATTTCAATAATACAGGAGAAGATTCTTCCGTTCTCCTCCGGGTAAAGGAAGACCATGATGGTGCAGAACCCTCAGGAAACTCAGTTTCTGCTATAAATCTTATAAGATTGGCTTCCATGGTTGCTGGAAGTAAGGCTGAGCACTATAAGCAAAATGCAGAACATCTATTGGCCGTTTTTGAGAGAAGGTTGAAAGATATGGCTATGGCAGTGCCTCTAATGTGTTGTGCAGCAGACATGTTGCATGTACCTTCACGGAAGCAAGTGGTTGTGGTTGGTGAAAGGACTTCTGGGGACTTTGAAAACATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAGAACAGTTATTCATATAGATCCCAACAACAAAGAAGAGATGGGATTTTGGGAAGTAAATAACAGCAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTTGACAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGCCCCCCTGTCACTGATCATTCGTCACTTGAATCTTTGCTCTCCAAAAAACCTTCCTCTTCATTAACATAA >Glyma19g39560.2 sequence type=CDS gene model=Glyma19g39560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCATCTCATTCCCACATACACATTAATCGACTCGCTTCCGAGCAGAGCCCCTACCTTCTCCAACACGCACATAACCCTGTTCATTGGTATCCCTGGGGTGAAGAAGCCTTCGCCGAAGCGCGCCGCCGAGACGCGCCTATCTTCTTGTCAATTGGTTACAGCACTTGTCACTGGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTGTACATGTCGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGAAAGTTAAAAGAAGCTTGGGATAGTAAGAGGGATATGCTGATTAAGCGTGGATCATATGCAATTGAACAACTTTCTGAGGCAATGTCTGCTAGTTCAGATTCTGATAAACTGCCTGATGGGGTTCCAGCTGATGCGTTACGCCTATGCTCGGAGCAGCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGTTGGAAGATACGGGGAAGTTGGATGGAGCTAATAGAATTCAGAAAATGGTTTTCTTTAGCTTGCAATGCATGGCAAAAGGCGGGATGCATGATCATATTGGAGGGGGATTTCACAGATACAGTGTGGATGAGTGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATCACGGGATATCCTTGATTATTTAAGGAGAGATATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCAGAGACTGAAGGAGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAGGCAAAGAGGTTGCAGACATACTTGGAGAGCATGCTGCTCTTTTCGAGGAGCACTATTACATCAAGCAATCAGGTAACTGTAACCTATCTGGAATGAGTGATCCTCACGATGAATTCAAGGGAAAGAATGTCCTGATTGAGAGAAAGGAACCTTCAGAACTGGCATCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAGTGCAGGCATAAGTTGTTTGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGGTTATTGTATCATGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAGATTCTCAAGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAAGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAACAGCTTTACAATGTGGAAACTCACAGGCTACACCATAGTTTCAGACATTCTCCGTCTAAAGCTCCTGCTTTCTTGGATGATTATGCTTTTCTGATTTCTGGATTGCTGGATCTCTATGAATTTGGTGGTGGAATTAACTGGCTTCTATGGGCCATTGAATTGCAGGAAACCCAGGATGCCTTGTTTCTTGATAGGACAGGAGGTGGATATTTCAATAATACAGGAGAAGATTCTTCCGTTCTCCTCCGGGTAAAGGAAGACCATGATGGTGCAGAACCCTCAGGAAACTCAGTTTCTGCTATAAATCTTATAAGATTGGCTTCCATGGTTGCTGGAAGTAAGGCTGAGCACTATAAGCAAAATGCAGAACATCTATTGGTCTGTAAAACCCTTTTCCCCTTTCCTCCTAAAAGCTGTTCTTGTTTATGTGCTAACAATGGTGGGATCAGGGATGGGGGTTATTAG
>Glyma19g39560.1 sequence type=predicted peptide gene model=Glyma19g39560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSHSHIHINRLASEQSPYLLQHAHNPVHWYPWGEEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEAVAKLLNDWFVSIKVDREERPDVDKVYMSYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPDDKYGRPGFKTILRKLKEAWDSKRDMLIKRGSYAIEQLSEAMSASSDSDKLPDGVPADALRLCSEQLSGSYDSKFGGFGSAPKFPRPVEINLMLYHSKKLEDTGKLDGANRIQKMVFFSLQCMAKGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDTFYSYISRDILDYLRRDMIGPEGEIFSAEDADSAETEGAARKKEGAFYIWTGKEVADILGEHAALFEEHYYIKQSGNCNLSGMSDPHDEFKGKNVLIERKEPSELASKYGMSIETYQEILGECRHKLFEVRSRRPKPHLDDKVIVSWNGLAISSFARASKILKGEVEGTKFYFPVVGTEAKGYLRIAEKAAFFIWKQLYNVETHRLHHSFRHSPSKAPAFLDDYAFLISGLLDLYEFGGGINWLLWAIELQETQDALFLDRTGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSAINLIRLASMVAGSKAEHYKQNAEHLLAVFERRLKDMAMAVPLMCCAADMLHVPSRKQVVVVGERTSGDFENMLAAAHALYDPNRTVIHIDPNNKEEMGFWEVNNSNVALMAKNNFAVDKVVALVCQNFTCSPPVTDHSSLESLLSKKPSSSLT* >Glyma19g39560.2 sequence type=predicted peptide gene model=Glyma19g39560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSHSHIHINRLASEQSPYLLQHAHNPVHWYPWGEEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEAVAKLLNDWFVSIKVDREERPDVDKVYMSYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPDDKYGRPGFKTILRKLKEAWDSKRDMLIKRGSYAIEQLSEAMSASSDSDKLPDGVPADALRLCSEQLSGSYDSKFGGFGSAPKFPRPVEINLMLYHSKKLEDTGKLDGANRIQKMVFFSLQCMAKGGMHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDTFYSYISRDILDYLRRDMIGPEGEIFSAEDADSAETEGAARKKEGAFYIWTGKEVADILGEHAALFEEHYYIKQSGNCNLSGMSDPHDEFKGKNVLIERKEPSELASKYGMSIETYQEILGECRHKLFEVRSRRPKPHLDDKVIVSWNGLAISSFARASKILKGEVEGTKFYFPVVGTEAKGYLRIAEKAAFFIWKQLYNVETHRLHHSFRHSPSKAPAFLDDYAFLISGLLDLYEFGGGINWLLWAIELQETQDALFLDRTGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSAINLIRLASMVAGSKAEHYKQNAEHLLVCKTLFPFPPKSCSCLCANNGGIRDGGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
