Glyma19g39420 - SoyBase

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Report for Sequence Feature Glyma19g39420

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46102119
stop:	46105994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62980	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein \| chr3:23273479-23276181 REVERSE LENGTH=594	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000822	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol hexakisphosphate binding	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0010011	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin binding	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF17	Panther	GRR1-RELATED, ARATH	JGI		ISS
UniRef100_E9NZT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/leucine rich repeat protein n=1 Tax=Phaseolus vulgaris RepID=E9NZT3_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1NB13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB13_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39420

Paralog	Evidence	Comments
Glyma03g36770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g206800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39420

Limit To All Plant Sequences

>Glyma19g39420.1   sequence type=CDS   gene model=Glyma19g39420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATATGGAACGAGAGGGACAGGAACGCGATCTCGCTGGTGTGTAAGTCATGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTGTTCGTGGGGAACTGCTACGCGGTGAGCCCTCTGATGGTGGTCAAGCGGTTCCCGGAGGTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTTGCGGACTTCAATTTGGTCCCCGATGGCTGGGGAGGTTACGTCTGCCCCTGGATCGCCGCCATGGCTCGCGCCTTCCCCTGCCTCGAAGAAATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCTAAGTCCTTCAAGAACTTCAAGGTCTTGGTTCTCACTTCCTGTGAGGGTTTTACCACTGATGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAGGGAATTGGACTTGCAAGAGAGTGAAGTGGAGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTATACGTCATTAGTTTCACTTAACATCTCTTGCTTAAACAATGAGGTGAGTTTATCTGCGCTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTCCGTCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACCTACTTCTCCAGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGCTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCAAGGCTAACATCGCTAAACTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGTAAGGATCTAAGAGAGTTAAGGGTGTTTCCTTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCGAATGCAGCCCTACATACAATTGCGCGGAACAGGACTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGGACTCCTGACTATCTAACCCATGAACCCCTGGATTCTGGTTTTGGGGCTATTGTAGAGCAATGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACTGACCGTGTTTTCGAGTATATCGGGACTTGTGGTAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTATCAGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCGGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCAAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATGATTGTCCAGTTGAGAAGCTTTATATATACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA

Predicted protein sequences of Glyma19g39420

Limit To All Plant Sequences

>Glyma19g39420.1   sequence type=predicted peptide   gene model=Glyma19g39420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRMAYTFSFPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVVKRFPEVRSIALKGKPHFADFNLVPDGWGGYVCPWIAAMARAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEEDLSGHWLSHFPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLLQCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRTNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTCGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRLE*

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