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Report for Sequence Feature Glyma19g39385

Feature Type:gene_model
Chromosome:Gm19
Start:46075852
stop:46079894
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g39385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03470AT Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein | chr1:866217-867493 REVERSE LENGTH=269 SoyBaseE_val: 2.00E-50ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005884GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin filament SoyBaseN/AISS
GO:0031965GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07765PFAM KIP1-like protein JGI ISS
UniRef100_D7KCF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase interacting family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCF2_ARALL SoyBaseE_val: 3.00E-44ISS
UniRef100_UPI000233E194UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E194 related cluster n=1 Tax=unknown RepID=UPI000233E194 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g39385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39385 not represented in the dataset
Glyma19g39385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39385
ParalogEvidenceComments
Glyma03g36735 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g206300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g39385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g39385
>Glyma19g39385.2   sequence type=transcript   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATGAAACCCTAATTGGCTTCGCTGTTAATTGCAATTCGCAATCTTTGCGAGTTGCGAGACTGAGAATTCAGAAATTTCTCTTTTGTTTTGCATTTTTCATGGCAAACGTTGTATTTTGTTGCAAATGAATTGGATTATGAAATCTAGAAAGGATGGAGGGGATTTTGCTTTGTTTTAAATAAAAGAAGAGTGAATCGAATTTTGAGGAGTAGCTGGTGATGAATGAATTATTGGCATGAGCTGCGACAACGTTTCTGCGCACCGTGTATTGTCACACGGGTTGTTGTTGCGATGAATAATGTGCCAAAATGCTAATCTGAGGCTCTCTCTCTCTTTTCATTTTAGAGCTAAATGAGAAGACAAGGGCAATGTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCTAAACGTGCAGAGATGTATTACAAGAAGCGACCAGAACTTGTGAGCATGGTTGAGGATTTCTACAGGGCACACCGCTCCCTAGCTGAGCGCTATGATCAAGTCAAGCCTGATACTACTGGAATTGGACACCTCATTACTGGGGGGTCACCTTTCGCTTCAGCAAAGTATCAGTTGGAGAAGTTGATGACTTTTTCAGATAACGGATATGATACCTATTCTGAGCATTGTGATGTGTACGAGTCTGAGGAATCTGAAGTTGATGATCCTGAGCAGGAGGAGGAGGAAGAAGAGGGGACCAAGTTTCTGCATAAAAGCACAAAAAAGGAGCAAGTTTTGTTTGTGGTTGCGGGTGATGTTGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGAACAAGGCTCAAAGGGATCAAATCAAGCAGAAGGATACCATTTGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAAGGCTTAGAGATGAGAATGAGGCACAAAAGGAACGACTCAAGCAGAAGGATGAAGAGAAGATTGAGGTGATAAGACAGCTGAGTTTAGCAATAGATGTGCTGAAGCAGGAGAATGCAAAGATGAGAAACTACATTGCTAAGGAATCCACCAAGAAATGGAAGAACCCATTTGAGATCAACAAACTTGTGGAAGCATTTTCGGTGAAGTTGTTCAGTGGCACTCCAAAGAATCAGCCCGGTGTTGAGCTCTCTAGATGTGGTTAACAAAGTTAGCAGATTGAGTAATTATACACAACAATATTTATAAAGATGTCTATATTTATGTTAGGAACTTATGACCCAAAAAGCCTAGGCTTAAAATCTTTTATTTTATATATTATATGTTCCTTGGTTTTGAATCCTAGTGTGAGTACTTGTCATATTCATTATATTCTTTTGAATGTCCTTTCTTTAGCGAGTTGTATTACAACCAATTGTTACAAATTTGCATTTGTATTCCTTATAATATACGTTGTCCATTCCAATTCCCATCTGTCTTTTACATGCCTCTTAATT

>Glyma19g39385.3   sequence type=transcript   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGAAGCCCAATGTTGGCCTTTCTATATAAAAAGTCGCCCTGCCTCACAGACAGAACTTCAATTCAATGTCATGAAACCCTAATTGGCTTCGCTGTTAATTGCAATTCGCAATCTTTGCGAGTTGCGAGACTGAGAATTCAGAAATTTCTCTTTTGTTTTGCATTTTTCATGGCAAACGTTGTATTTTGTTGCAAATGAATTGGATTATGAAATCTAGAAAGGATGGAGGGGATTTTGCTTTGTTTTAAATAAAAGAAGAGTGAATCGAATTTTGAGGAGTAGCTGGTGATGAATGAATTATTGGCATGAGCTGCGACAACGTTTCTGCGCACCGTGTATTGTCACACGGGTTGTTGTTGCGATGAATAATGTGCCAAAATGCTAATCTGAGGCTCTCTCTCTCTTTTCATTTTAGGTTTTTGTTCTCTCTTTTATCGTTTCACAAGCTCTTCTTACGATTTTCTTTCTTTCCCCAAATTATTGATTCGGATTGCAGACTCGTGGCTCTGCATTTCCTAGGATCCATTTCATTCTAAATGAATCGCGAATGAATTTTTGAAACTCTGAATTGAAAATATTTATTAGTGAAAAAAATGTTATTTCTTGGAAAAAAAAATTTTAAAAATAGCATAGCTCTTTTTCAAATTCCCCCCTTTCAATTAAGAGCCCGTCACTAACTCACTGGCAAAAAAAAGGGGGGCCAATATCAAGGGTGTTTAGCCAAACAAACTGCTCATAATTCAAAAGGAGCTAAATGAGAAGACAAGGGCAATGTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCTAAACGTGCAGAGATGTATTACAAGAAGCGACCAGAACTTGTGAGCATGGTTGAGGATTTCTACAGGGCACACCGCTCCCTAGCTGAGCGCTATGATCAAGTCAAGCCTGATACTACTGGAATTGGACACCTCATTACTGGGGGGTCACCTTTCGCTTCAGCAAAGTATCAGTTGGAGAAGTTGATGACTTTTTCAGATAACGGATATGATACCTATTCTGAGCATTGTGATGTGTACGAGTCTGAGGAATCTGAAGTTGATGATCCTGAGCAGGAGGAGGAGGAAGAAGAGGGGACCAAGTTTCTGCATAAAAGCACAAAAAAGGAGCAAGTTTTGTTTGTGGTTGCGGGTGATGTTGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGAACAAGGCTCAAAGGGATCAAATCAAGCAGAAGGATACCATTTGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAAGGCTTAGAGATGAGAATGAGGCACAAAAGGAACGACTCAAGCAGAAGGATGAAGAGAAGATTGAGGTGATAAGACAGCTGAGTTTAGCAATAGATGTGCTGAAGCAGGAGAATGCAAAGATGAGAAACTACATTGCTAAGGAATCCACCAAGAAATGGAAGAACCCATTTGAGATCAACAAACTTGTGGAAGCATTTTCGGTGAAGTTGTTCAGTGGCACTCCAAAGAATCAGCCCGGTGTTGAGCTCTCTAGATGTGGTTAACAAAGTTAGCAGATTGAGTAATTATACACAACAATATTTATAAAGATGTCTATATTTATGTTAGGAACTTATGACCCAAAAAGCCTAGGCTTAAAATCTTTTATTTTATATATTATATGTTCCTTGGTTTTGAATCCTAGTGTGAGTACTTGTCATATTCATTATATTCTTTTGAATGTCCTTTCTTTAGCGAGTTGTATTACAACCAATTGTTACAAATTTGCATTTGTATTCCTTATAATATACGTTGTCCATTCCAATTCCCATCTGTCTTTTACATGCCTCTTAATT
Coding sequences of Glyma19g39385
>Glyma19g39385.1   sequence type=CDS   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAATGACGAACAATCAACCGTCACAGTGGTGGTGGCTTGAAAGCCACACCACCACTAATCGATCCCCATGGCTTCAATCCACTCTCTCTGAGCTAAATGAGAAGACAAGGGCAATGTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCTAAACGTGCAGAGATGTATTACAAGAAGCGACCAGAACTTGTGAGCATGGTTGAGGATTTCTACAGGGCACACCGCTCCCTAGCTGAGCGCTATGATCAAGTCAAGCCTGATACTACTGGAATTGGACACCTCATTACTGGGGGGTCACCTTTCGCTTCAGCAAAGTATCAGTTGGAGAAGTTGATGACTTTTTCAGATAACGGATATGATACCTATTCTGAGCATTGTGATGTGTACGAGTCTGAGGAATCTGAAGTTGATGATCCTGAGCAGGAGGAGGAGGAAGAAGAGGGGACCAAGTTTCTGCATAAAAGCACAAAAAAGGAGCAAGTTTTGTTTGTGGTTGCGGGTGATGTTGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGAACAAGGCTCAAAGGGATCAAATCAAGCAGAAGGATACCATTTGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAAGGCTTAGAGATGAGAATGAGGCACAAAAGGAACGACTCAAGCAGAAGGATGAAGAGAAGATTGAGGTGATAAGACAGCTGAGTTTAGCAATAGATGTGCTGAAGCAGGAGAATGCAAAGATGAGAAACTACATTGCTAAGGAATCCACCAAGAAATGGAAGAACCCATTTGAGATCAACAAACTTGTGGAAGCATTTTCGGTGAAGTTGTTCAGTGGCACTCCAAAGAATCAGCCCGGTGTTGAGCTCTCTAGATGTGGTTAA

>Glyma19g39385.2   sequence type=CDS   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCTAAACGTGCAGAGATGTATTACAAGAAGCGACCAGAACTTGTGAGCATGGTTGAGGATTTCTACAGGGCACACCGCTCCCTAGCTGAGCGCTATGATCAAGTCAAGCCTGATACTACTGGAATTGGACACCTCATTACTGGGGGGTCACCTTTCGCTTCAGCAAAGTATCAGTTGGAGAAGTTGATGACTTTTTCAGATAACGGATATGATACCTATTCTGAGCATTGTGATGTGTACGAGTCTGAGGAATCTGAAGTTGATGATCCTGAGCAGGAGGAGGAGGAAGAAGAGGGGACCAAGTTTCTGCATAAAAGCACAAAAAAGGAGCAAGTTTTGTTTGTGGTTGCGGGTGATGTTGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGAACAAGGCTCAAAGGGATCAAATCAAGCAGAAGGATACCATTTGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAAGGCTTAGAGATGAGAATGAGGCACAAAAGGAACGACTCAAGCAGAAGGATGAAGAGAAGATTGAGGTGATAAGACAGCTGAGTTTAGCAATAGATGTGCTGAAGCAGGAGAATGCAAAGATGAGAAACTACATTGCTAAGGAATCCACCAAGAAATGGAAGAACCCATTTGAGATCAACAAACTTGTGGAAGCATTTTCGGTGAAGTTGTTCAGTGGCACTCCAAAGAATCAGCCCGGTGTTGAGCTCTCTAGATGTGGTTAA

>Glyma19g39385.3   sequence type=CDS   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCTAAACGTGCAGAGATGTATTACAAGAAGCGACCAGAACTTGTGAGCATGGTTGAGGATTTCTACAGGGCACACCGCTCCCTAGCTGAGCGCTATGATCAAGTCAAGCCTGATACTACTGGAATTGGACACCTCATTACTGGGGGGTCACCTTTCGCTTCAGCAAAGTATCAGTTGGAGAAGTTGATGACTTTTTCAGATAACGGATATGATACCTATTCTGAGCATTGTGATGTGTACGAGTCTGAGGAATCTGAAGTTGATGATCCTGAGCAGGAGGAGGAGGAAGAAGAGGGGACCAAGTTTCTGCATAAAAGCACAAAAAAGGAGCAAGTTTTGTTTGTGGTTGCGGGTGATGTTGAAGTGATGAAGCTGAGGGATGAAATTAAGAGACTCAATGAAGAGAACAAGGCTCAAAGGGATCAAATCAAGCAGAAGGATACCATTTGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAAGGCTTAGAGATGAGAATGAGGCACAAAAGGAACGACTCAAGCAGAAGGATGAAGAGAAGATTGAGGTGATAAGACAGCTGAGTTTAGCAATAGATGTGCTGAAGCAGGAGAATGCAAAGATGAGAAACTACATTGCTAAGGAATCCACCAAGAAATGGAAGAACCCATTTGAGATCAACAAACTTGTGGAAGCATTTTCGGTGAAGTTGTTCAGTGGCACTCCAAAGAATCAGCCCGGTGTTGAGCTCTCTAGATGTGGTTAA
Predicted protein sequences of Glyma19g39385
>Glyma19g39385.1   sequence type=predicted peptide   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGMTNNQPSQWWWLESHTTTNRSPWLQSTLSELNEKTRAMLKLIEEDADSFAKRAEMYYKKRPELVSMVEDFYRAHRSLAERYDQVKPDTTGIGHLITGGSPFASAKYQLEKLMTFSDNGYDTYSEHCDVYESEESEVDDPEQEEEEEEGTKFLHKSTKKEQVLFVVAGDVEVMKLRDEIKRLNEENKAQRDQIKQKDTICDEVMMLREEIERLRDENEAQKERLKQKDEEKIEVIRQLSLAIDVLKQENAKMRNYIAKESTKKWKNPFEINKLVEAFSVKLFSGTPKNQPGVELSRCG*

>Glyma19g39385.2   sequence type=predicted peptide   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKLIEEDADSFAKRAEMYYKKRPELVSMVEDFYRAHRSLAERYDQVKPDTTGIGHLITGGSPFASAKYQLEKLMTFSDNGYDTYSEHCDVYESEESEVDDPEQEEEEEEGTKFLHKSTKKEQVLFVVAGDVEVMKLRDEIKRLNEENKAQRDQIKQKDTICDEVMMLREEIERLRDENEAQKERLKQKDEEKIEVIRQLSLAIDVLKQENAKMRNYIAKESTKKWKNPFEINKLVEAFSVKLFSGTPKNQPGVELSRCG*

>Glyma19g39385.3   sequence type=predicted peptide   gene model=Glyma19g39385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKLIEEDADSFAKRAEMYYKKRPELVSMVEDFYRAHRSLAERYDQVKPDTTGIGHLITGGSPFASAKYQLEKLMTFSDNGYDTYSEHCDVYESEESEVDDPEQEEEEEEGTKFLHKSTKKEQVLFVVAGDVEVMKLRDEIKRLNEENKAQRDQIKQKDTICDEVMMLREEIERLRDENEAQKERLKQKDEEKIEVIRQLSLAIDVLKQENAKMRNYIAKESTKKWKNPFEINKLVEAFSVKLFSGTPKNQPGVELSRCG*






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