SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62000 | AT | Annotation by Michelle Graham. TAIR10: auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859 | SoyBase | E_val: 4.00E-130 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008285 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
| GO:0010047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit dehiscence | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PF02309 | PFAM | AUX/IAA family | JGI | ISS | |
| PF02362 | PFAM | B3 DNA binding domain | JGI | ISS | |
| PF06507 | PFAM | Auxin response factor | JGI | ISS | |
| UniRef100_B9RFY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RFY9_RICCO | SoyBase | E_val: 5.00E-148 | ISS |
| UniRef100_UPI000233E45E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E45E related cluster n=1 Tax=unknown RepID=UPI000233E45E | SoyBase | E_val: 0 | ISS |
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Glyma19g39340 not represented in the dataset |
Glyma19g39340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g206100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39340.2 sequence type=CDS gene model=Glyma19g39340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAAGAGGAGAGACATGGACTCTCCAAACACACAACAAGGCCTCCTTCCCTCCAAGAAAGGTGTGAAAGATAGTTTGTACACTGAACTGTGGCGTGCATGTGCTGGGTCATTCGTTTATGTTCCTCGCGAAGAAGAGACGGTTCTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATATACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTGTATGATTTGCCTTCTAAGATCTTATGCAAGATTATGCATATTGAATTAAAGGCCGAAGCCTTCTCAGACGAGGTTTATGCTCAAGTTACATTAGTTCCGGCGCTCAAGCAAGATAACCTTCGTTTGGAGGTGGAAGAGAATGATCAGATACCTTCCATAACTACAACCTATACTTTTAGTAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTGTTCCGAAGAAACATGCTGATGAATGCTTCCCTCCGCTGGACATGACTCAACAAACACCAGCGCAGGAAATTGTTGCAAAGGACTTGAATGGGTTTGAGTGGCATTTTCGACACATATATCGTGGTAAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTCGTTAGAGCGGAATCTGGAGAAATTCGTGTTGGGATTCGTCGGGCAACGGAACATCTCAGCAATGTATCGCAATCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCACGCTGTTAGCTCAGGAACCATGTTTATTGTCTATTACCACCCATGGACAAATCCCTTTGAATTTATTGTTCCTTTGCGAACCTATCTGAAGTCAACTGTACCAGACTATCCAATTGGAATGAGGGTACAAATGCAGCATGAAGTTGAAGAATCTTTAAGAAGACATGCAGGTACGATAATTGGTCATGAAGATATCGACAAGATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCGTACTAGATGACAAAATGAATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGCCAAGGAGAAGAAGCAAGTTCCTGCTCTCCCCACAACAAAAAAAGCACTTGCACTTAACCAGCGCTCTTTGCCTGGAATAAGTAGCTTTGGCATGCATGATGGTCAGAATTCAGCTGGGCCTTCATCTCAGACTCGGAGAGAAGATAGAGACTTGCAAGGTCAAGATTACAGCGGCATACATTCTGCACAGCCTTTACAAAGAGCACCACCAACTGATGTTATCCACCCCTCGAAGGTCCCAATCCGTGGCTCGCGGTTTGGGAAGGAGAATCCGAATCAGCTTCCCTTTCCCATGCAAGGTCCTCTTCATAAATCTCTTAGCAGATCAATGTCACTTACACATGAAGACCTGTCAATTACAAGCTCAAATCTAAGCTCCATTGGTTCTGAATCTCTGGGATGGCCTTCAACTGAATCTAGAAATGAAAATGATGTTCCTTTTGGGCAGCCTGGCAGTTGCAGTACATTCAAGCTTTTTGGAGTTAGCTTAATTGACCGCTCCTCGGAGCTCCCTTCATTGCAATCTGCTGCTTTCAACAAGACTTCGAGTCTCCTTTCTAATCCTCCAATGCGTGTTGCCCCAGGGAAAACATGTAAGAAGTGTCACCGTGTTAATAATCGGAGCTGCACAAAGGTGCTTAAGTTGGGAACTGCTCTTGGAAGAGCAGTCGACCTTGCACGCTTTCATGGATATACCGAACTCATTGCTGAACTCGACTCCATGTTTGAGTTTCGAGGAAGTTTAATCAATGAAAGCAGTGGATGGCATGTCACATGCATGGATGATGATGGAGACATGATGCAATTAGGAGATTATCCATGGCAGGATTTCCAGGGTGTGGTGCAAAAGATGATCATATGTCCAAAGGAAGGTACTAACAATATCAAGCCAAGCTCCTCAGCAAATCCATCAAGCCTTTAG
>Glyma19g39340.2 sequence type=predicted peptide gene model=Glyma19g39340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKRRDMDSPNTQQGLLPSKKGVKDSLYTELWRACAGSFVYVPREEETVLYFPQGHLEQVAAYTQHQQDGHMEIPVYDLPSKILCKIMHIELKAEAFSDEVYAQVTLVPALKQDNLRLEVEENDQIPSITTTYTFSKILTPSDTSTHGGFSVPKKHADECFPPLDMTQQTPAQEIVAKDLNGFEWHFRHIYRGKPKRHLLTSGWSTFVNAKKLVAGDSCIFVRAESGEIRVGIRRATEHLSNVSQSSSLISGHSMQLGILASASHAVSSGTMFIVYYHPWTNPFEFIVPLRTYLKSTVPDYPIGMRVQMQHEVEESLRRHAGTIIGHEDIDKIRWPGSEWRCLKVQWDAVLDDKMNPERVCPWWIEPLESAKEKKQVPALPTTKKALALNQRSLPGISSFGMHDGQNSAGPSSQTRREDRDLQGQDYSGIHSAQPLQRAPPTDVIHPSKVPIRGSRFGKENPNQLPFPMQGPLHKSLSRSMSLTHEDLSITSSNLSSIGSESLGWPSTESRNENDVPFGQPGSCSTFKLFGVSLIDRSSELPSLQSAAFNKTSSLLSNPPMRVAPGKTCKKCHRVNNRSCTKVLKLGTALGRAVDLARFHGYTELIAELDSMFEFRGSLINESSGWHVTCMDDDGDMMQLGDYPWQDFQGVVQKMIICPKEGTNNIKPSSSANPSSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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