SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03110 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0080151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0144 | KOG | RNA-binding protein CUGBP1/BRUNO (RRM superfamily) | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF35 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9S3Y1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NB04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB04_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g39300 not represented in the dataset |
Glyma19g39300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g205700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39300.1 sequence type=CDS gene model=Glyma19g39300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGAGAGTAAATCTAGCAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCCAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAAGACAAAGCAACTCGTGCTTCCCGAGGTTGTTGCTTCCTGATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGCTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGGATTCGAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGTAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGGCTCCGGGAGGTTATGGCCTCATGCCATACCGCATGCCACCAATGCAGAGTCAACATGGTTACCATAATGTGATGCCTCACATGAATCAAGTAAATGCATTACGGCCTGATCTTGGCCCCAACATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCTGGTGGAAATAACAGCTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGAAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA
>Glyma19g39300.1 sequence type=predicted peptide gene model=Glyma19g39300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEESKSSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEDSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHLSMFGALPMSYVPPYNGYAYQAPGGYGLMPYRMPPMQSQHGYHNVMPHMNQVNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPAGGNNSSAASSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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