Glyma19g39260 - SoyBase

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Report for Sequence Feature Glyma19g39260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46002646
stop:	46007173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63000	AT	Annotation by Michelle Graham. TAIR10: NPL4-like protein 1 \| chr3:23283836-23285357 FORWARD LENGTH=413	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2834	KOG	Nuclear pore complex, rNpl4 component (sc Npl4)	JGI		ISS
PTHR12710	Panther	NUCLEAR PROTEIN LOCALIZATION 4	JGI		ISS
PF05021	PFAM	NPL4 family	JGI		ISS
PF11543	PFAM	Nuclear pore localisation protein NPL4	JGI		ISS
UniRef100_G8A181	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NPL4-like protein n=1 Tax=Medicago truncatula RepID=G8A181_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NB01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB01_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39260

Paralog	Evidence	Comments
Glyma03g36600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g205200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39260

Limit To All Plant Sequences

>Glyma19g39260.1   sequence type=CDS   gene model=Glyma19g39260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTCAGAATTCGTAGCCGCGATGGCCTGGAGCGAGTGAGCGTCGAAAACCCCCTCGCCACAACAGTCTCGGACCTAAAACGGATTATCCAAACCCAATTGGGAATCCCGGTTCACAACCAAACCCTCTCCACCAACCAGAACCTCCTCTTGGCCAAATCCCTCGAAGATCTCCTCCGATTCACCGACATGTCCAACCTCGATGCGTCTCTCTCGTCTCTTAACCTCGGCCACGGCTCCATCGTCTTCTTGGCCTACGAGGGCGAGCGGCGCGTGGCGGGCCCCGCCTTCAACCCCGCCGGCTCCTTCGGCCGCAAGATGACCATGGACGACCTCATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGAATCCACACTGCGAGCTCGTCTCCTTCGACCGCGACTGCGCCAACGCGTTCCAGCACTACGTCAACGACACTCTCGCCTTCGCCGTCAAGCGCGGGGGGTTCATGTACGGCACCGTTTCGGAGGTGGGAAAGGTCGAGGTGGACTTCATCTACGAGCCTCCGCAGCAGGGTTCGGAGGACAATCTCGTCTTTTTCAGGGACCCAGAAGAGGAGAAGTTTGTTGAAGCTATTGCGGTGGGGTTGGGGATGAGGAAGGTTGGGTTTATTTTCACGCAGACGATTACTCAGGATAAGAAGGATTACACTTTGTCGAATAGGGAGGTGCTTCAGGCTGTGGAGTACCATGCCGAGAGTGGGTTGAAGGAGTGGGCTACTGCGGTGGTTAAGCTTGAGGTGAATGAGGAAATGGGTGGTGCTGATGTGCATTTTGAAGCGTTTCAGATGAGTGATGTGTGTGTGAGGTTGTTTAAGGAAGGGTGGTTCGAGACGGAGATCAAGGAGGACGATGATCCCAAGTTGTCGAAGATGAAGAAGGATGTGGTTGTCGGGGTTAAGGATACTAGAGAGGTTGACAATGATTTCTTCTTGGTCGTCGTCAAAATCGCTGATCATCAGGGTCCTCTTTCATCATCATTTCCCATTGAGAACCGGAACACTCAAGTGACTATGAAGGCTTTGAAGAATCATCTGGAACGGTCAAAAAATCTTCCATTTGTGAAGCGAATTTCTGATTTTCATCTTCTTCTCGTATTAGCAAGGGTTTTAGACCTGAATGCTGATGTTCCTGCATTGACGGAATGTGTGCAGACACAGACTTCTGTTCCAGAAGGTTATCAGATCCTTATTGAGTCTATGGCAAGCACTGCTTGA

Predicted protein sequences of Glyma19g39260

Limit To All Plant Sequences

>Glyma19g39260.1   sequence type=predicted peptide   gene model=Glyma19g39260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLRIRSRDGLERVSVENPLATTVSDLKRIIQTQLGIPVHNQTLSTNQNLLLAKSLEDLLRFTDMSNLDASLSSLNLGHGSIVFLAYEGERRVAGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCANAFQHYVNDTLAFAVKRGGFMYGTVSEVGKVEVDFIYEPPQQGSEDNLVFFRDPEEEKFVEAIAVGLGMRKVGFIFTQTITQDKKDYTLSNREVLQAVEYHAESGLKEWATAVVKLEVNEEMGGADVHFEAFQMSDVCVRLFKEGWFETEIKEDDDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRNTQVTMKALKNHLERSKNLPFVKRISDFHLLLVLARVLDLNADVPALTECVQTQTSVPEGYQILIESMASTA*

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