Report for Sequence Feature Glyma19g39200
Feature Type: gene_model
Chromosome: Gm19
Start: 45966588
stop: 45969729
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g39200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G58520 AT
Annotation by Michelle Graham. TAIR10: Ubiquitin carboxyl-terminal hydrolase family protein | chr3:21643921-21645277 REVERSE LENGTH=418
SoyBase E_val: 0 ISS
PF11955 PFAM
Plant organelle RNA recognition domain
JGI ISS
UniRef100_I1NAZ3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAZ3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q940L8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT3g58520/F14P22_110 n=3 Tax=Arabidopsis thaliana RepID=Q940L8_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g39200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g39200
Paralog Evidence Comments
Glyma03g36540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g39200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g204700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g39200
Coding sequences of Glyma19g39200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g39200.1 sequence type=CDS gene model=Glyma19g39200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCAGCAATGGCGGGGAATAGTGAAAGTGCGTCTGAAATGGGTGAAGAACCGAAGCCTGGACCACGTGATCGACAAGGAAACCGATCTGAAGGCGGCGTGCCTCCTGAAGGACGCCGTGAACCGCTCCTCCACCGGCTTCCTCACCGCGCAATCCGTCGCCGACTGGCAGAAACTCCTCGGCCTCACCGTCCCCGTCCTCCGCTTTCTCCGCCGCTATCCCACTCTCTTCCAGGAGTTCCCCCACCCTCGCTGGGCCTCCCTCCCCTGCTTCCGCCTCACCGACACCGCACTCTTCCTCCACTCCCAGGAACTCTCCCTCCACCAAACCCACCAAAACGACGCCGTCCAAACCCTCTCCAAGCTCCTCATGATGTCCAACTCACGCGCCCTCCCCCTCCACTCCCTCCACGCGCTCAAGTGGGATCTCGGTTTACCCGACACCTTCCACAAAACCCTAGTCCCCCTCTACCCCCACCAGTTCCAATTTGTCAGGTCCCCCAACGGCGTCGTTTCAATCCAGCTATCTCGCTGGCCCGAGGAACTCGCGGTTTCCGCGCTGCAGAAGAGCAACGAGGGTGGGACCCACTACCGCGAATTCAAGCGAGGACAATCGGCTTTGGCTTTTCCGATGCGGTTTCCGAGGGGTTACGGCGCGCAGAAGAAAGTGAGGACGTGGATGGAGGAGTTTCAGAAGCTTCCTTACGTTTCTCCTTACACGGATTCCACGAAGATTGATCCTAACAGCGATTTGATGGAGAAGCGCGTCGTTGGGGTTCTGCACGAGATTTTGAGTTTGACTCTGCACAAGAAAACCAAGAGGAACTACTTGAGGGGCTTGAGGGAAGAGTTTAACCTTCCGCATAAGTTTACCCGAATTTTCACCAGGTATCCCGGGATTTTTTACCTCTCCTTGAAGTGTAAAACCACCACGGTTACTCTCAAGGAAGGGTACCAGAGTGGGAAGCTAGTGGACCCGCACCCTCTTGCTCGGCATAGAGATAAGTTTTACCATGTGATGCAGACGGGGCTTCTATATCGCGGCGATGGATCGTTGAAACCTCAGGAGAACAATTTGCTGGCTGAGAATGATAAATTAAGGAGTGAAGACTCTGAGGTTGAAATGAGTGATGAACTCTGCGAGACTGAGTTAAAAGTTGAAGATGACAGTAGTTAG
Predicted protein sequences of Glyma19g39200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g39200.1 sequence type=predicted peptide gene model=Glyma19g39200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKQQWRGIVKVRLKWVKNRSLDHVIDKETDLKAACLLKDAVNRSSTGFLTAQSVADWQKLLGLTVPVLRFLRRYPTLFQEFPHPRWASLPCFRLTDTALFLHSQELSLHQTHQNDAVQTLSKLLMMSNSRALPLHSLHALKWDLGLPDTFHKTLVPLYPHQFQFVRSPNGVVSIQLSRWPEELAVSALQKSNEGGTHYREFKRGQSALAFPMRFPRGYGAQKKVRTWMEEFQKLPYVSPYTDSTKIDPNSDLMEKRVVGVLHEILSLTLHKKTKRNYLRGLREEFNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLKEGYQSGKLVDPHPLARHRDKFYHVMQTGLLYRGDGSLKPQENNLLAENDKLRSEDSEVEMSDELCETELKVEDDSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
