Report for Sequence Feature Glyma19g39190
Feature Type: gene_model
Chromosome: Gm19
Start: 45961021
stop: 45963598
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g39190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G06610 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF620) | chr5:2029953-2033620 FORWARD LENGTH=368
SoyBase E_val: 6.00E-156 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04788 PFAM
Protein of unknown function (DUF620)
JGI ISS
UniRef100_I1NAZ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAZ2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FG09 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD30234.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FG09_ARATH
SoyBase E_val: 3.00E-153 ISS
Expression Patterns of Glyma19g39190
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g39190
Paralog Evidence Comments
Glyma03g36530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g39190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g204600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g39190
Coding sequences of Glyma19g39190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g39190.1 sequence type=CDS gene model=Glyma19g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTCGTCTTGCTACATTATCAGAAGAACCCATCAACGACCAAGACAACAAGAGAAGCACCTCTTCAAGCTCAAAAAAATGGCGAAACTGGAACTGGATCAAGACCCACTTCTTCCACAAGAAGCCCGACCTCAAGATCCTCCTCAGCGTTCTCGCCTGCCCTCTCTTCCCTGTCCCTCCAAACACCCCATCGGACCCACCCCTCAACCAGCTCTCTTCTTCAGCTCAGTATATTATCCAGCACTTCACCGCCGCCACCGGCTGCCGGAAGCTGGAAGGGACGGTCAAGAACGTCTTTGCCACCGGAAAGGTGGAAATGTGGGCCGTGGATGAGGTCGGAAACACCGGAGTCTCCGAGAGAGGCTGCTTTGTCATATGGCAGATGCTCCCCGACAAGTGGCAGATTGAGCTTGCTGTCGCTGGTCACAAGGTTGTCGCCGGTAGTGATGGCACCGTCGCCTGGCGCCACACTCCTTGGCTCGGGGCCCATGCCGCAAAAGGCGGCATCCGCCCTCTTCGACGGGCTGTTCAGGGACTGGACCCTTTGGCAGTGTCTGCTGTATTCTCTGCAGCACAATACATGGGAGAGAAACAAATCTCAGGCATCGATTGTTTCGTTCTAAAGCTGTCACCTGATCAGAAGGACCTCGTTGACCGAAGTGACAACACTGCTGAGATGATCAAGCACGTTGCATTTGGCTACTTCAGCCAGAGAAATGGTCTATTGGTGCACCTTGAGGACTCTTACCTTACTAGAATCCAATCCCCTGGGACACACCCCACGTACTGGGAGACCACAATGTCAACGAAAATTGAGGATTACAAAATGGTGGATGGTGTGATGATTGCACATGCTGGCCATTCAACCGTGATCATCACAAGGTTTGGGGACAATCTTAAAACAGGACCTGCCATCACACGGTTGGAAGAATCATGGACCATTGATGATGTTGCATTCAACGTTCAAGGCCTTTCCATGGACTGCTTCATACCCCCTAAGGAACTCCACAAGGACTACCCACAAGAAGATCTAGATTGGAGATCACCCTTGCATAGATGA
Predicted protein sequences of Glyma19g39190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g39190.1 sequence type=predicted peptide gene model=Glyma19g39190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRLATLSEEPINDQDNKRSTSSSSKKWRNWNWIKTHFFHKKPDLKILLSVLACPLFPVPPNTPSDPPLNQLSSSAQYIIQHFTAATGCRKLEGTVKNVFATGKVEMWAVDEVGNTGVSERGCFVIWQMLPDKWQIELAVAGHKVVAGSDGTVAWRHTPWLGAHAAKGGIRPLRRAVQGLDPLAVSAVFSAAQYMGEKQISGIDCFVLKLSPDQKDLVDRSDNTAEMIKHVAFGYFSQRNGLLVHLEDSYLTRIQSPGTHPTYWETTMSTKIEDYKMVDGVMIAHAGHSTVIITRFGDNLKTGPAITRLEESWTIDDVAFNVQGLSMDCFIPPKELHKDYPQEDLDWRSPLHR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
