Glyma19g39180 - SoyBase

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Report for Sequence Feature Glyma19g39180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45952175
stop:	45957889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58490	AT	Annotation by Michelle Graham. TAIR10: Phosphatidic acid phosphatase (PAP2) family protein \| chr3:21633065-21635057 FORWARD LENGTH=416	SoyBase	E_val: 0	ISS
GO:0006665	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingolipid metabolic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0090332	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal closure	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0042392	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphingosine-1-phosphate phosphatase activity	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
KOG2822	KOG	Sphingoid base-phosphate phosphatase	JGI		ISS
PTHR14969	Panther	SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE	JGI		ISS
PTHR14969:SF4	Panther	SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE	JGI		ISS
PF01569	PFAM	PAP2 superfamily	JGI		ISS
UniRef100_G8A197	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sphingosine-1-phosphate phosphatase n=1 Tax=Medicago truncatula RepID=G8A197_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NAZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39180

Paralog	Evidence	Comments
Glyma03g36520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g204500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39180

Limit To All Plant Sequences

>Glyma19g39180.1   sequence type=CDS   gene model=Glyma19g39180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGAGGGTGCAGCAGTGTGGCAAGGTGCGGTTTTAGGTGGAATAATCTTCTGGCTTGTTTCTGCTTCATACCTCAACGTTACTCGCAAACTTAGGTCTTTCTTACAACCTTGGGTTACTCATCACGTTGTCACTCAAACCCCTATTATCCTCAAGATCCAGAGTTACGGGTTTGGGTTCCTGGATGCACTTTTCTCTGGGTTGTCTTGCGTTGTTTCTGTGCCCTTCTACACTGCTTTTCTCCCTCTGCTATTCTGGAGTGGTCATGGCAAATTGGCGAGGCAGATGACGTTGTTGATGGCGTTTTGTGATTATCTTGGGAACTGCATAAAGGATGTGGTTTCAGCTCCAAGACCTGCTTCTCCACCTGTCAAGAGAGTAACTGCCACCAGAGATGAAGAGGATAATGCGTTAGAATATGGATTGCCTTCCTCTCACACACTTAACACAGTTTGCTTATCTGGCTACCTTTTGCACTATGTCCTGACTCATACTCAAATTCAAGGTGCCTATGTTACTTATCTTGGAGTTTCTCTTGCCTGCATGCTGGTGTTTTTCATTGGTTTGGGAAGAATTTATCTTGGCATGCATAGTGTGGTTGATGTTCTTGCTGGCCTTCTTATTGGACTCGTTGTCCTTGCATTTTGGCTTACGGTTGATGAATACATGGACAGTTTTGTGATCTCAGGACAAAATGAATTTGGTTTTGGCCCGGTTACGTCCTTTTGGGCTGCCTTGAGCTTTCTCTTGCTTTTTGCTTATCCAACTCCTGAACTTCCAACTCCAAGCTTTGAGTATCACACTGCTTTCGATGGTGTTGCATTGGGAATTGTCTCTGGGGTGCAACAAACATACCATCAATTTCACCATGCCAATGTTCCTCGTTTGTTCTCGTCAGAGCTGACTATACCTGTATTTCTGGGAAGGATGCTATTGGGAATACCTACAATTCTAATTGTGAAGTTCTGCAGTAAGACTCTCGCAAAATGGACCATTCCTGTGGTAGCGAACACCTTGGGCATCCCAATAAAATCAACCGGCTATATACCTACACTGAATGGATCTGTGACAGGTAAAATGTCTGATAAGCTTAAACAAGGTTACTTGCAAAAGCTCCTTTCCCAGCACAAGGCATTCGATGTTGATACCGGAATTAGATTTGTTCAGTATGCAGGGCTTGCCTGGTCTGTAGTTGACCTAGTGCCATCTCTTTTTTCATACATGAGCTTGTGA

Predicted protein sequences of Glyma19g39180

Limit To All Plant Sequences

>Glyma19g39180.1   sequence type=predicted peptide   gene model=Glyma19g39180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEGAAVWQGAVLGGIIFWLVSASYLNVTRKLRSFLQPWVTHHVVTQTPIILKIQSYGFGFLDALFSGLSCVVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDVVSAPRPASPPVKRVTATRDEEDNALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGVSLACMLVFFIGLGRIYLGMHSVVDVLAGLLIGLVVLAFWLTVDEYMDSFVISGQNEFGFGPVTSFWAALSFLLLFAYPTPELPTPSFEYHTAFDGVALGIVSGVQQTYHQFHHANVPRLFSSELTIPVFLGRMLLGIPTILIVKFCSKTLAKWTIPVVANTLGIPIKSTGYIPTLNGSVTGKMSDKLKQGYLQKLLSQHKAFDVDTGIRFVQYAGLAWSVVDLVPSLFSYMSL*

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