Glyma19g39170 - SoyBase

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Report for Sequence Feature Glyma19g39170

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45946109
stop:	45951906
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58500	AT	Annotation by Michelle Graham. TAIR10: protein phosphatase 2A-4 \| chr3:21635503-21638911 REVERSE LENGTH=313	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0000159	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0371	KOG	Serine/threonine protein phosphatase 2A, catalytic subunit	JGI		ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF21	Panther	CALCINEURIN 1A	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_I1NAY9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1NAY9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NAY9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1NAY9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39170

Paralog	Evidence	Comments
Glyma03g36510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g204400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g39170

Limit To All Plant Sequences

>Glyma19g39170.3   sequence type=transcript   gene model=Glyma19g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAACACTACGTGGGGCGAGTGTGATTGGAGGGAGTGAAGTCTTTCCCTCCACAAGAAAAAAAAATCAGAAAAAGGAAATGAGAGATTGTTGGACACCGTGCAAATCAAGCACTTTGCTTGTTATTTCACGCGCCCTCTCTCCATTTTGACCTCCCTTTCCTCTTCGTTCCCCACTCACTGCAACGGCGCCGGAGATCCGTCGCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCGATGGGCGCCAATTCCATGCTCTCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGGTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAATTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCGCTCCTTGTGGCACTGAAAGTTCGGTATCCCCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCTGAAATATTCTGTTTGCATGGTGGACTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGCCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACTAACAGCCTTAAATTGATTGCTAGAGCTCATCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGTCACACATTCATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAATGTAGCTGTTGAATGTCATACTGTTATATCATGGTTACCTCTACTGCACTAATTTCAGGTAGTTGCGCATCCTCATATCACGAGATTGCTGTAAACATTTAAATCCATGGATATACACGTTCCGTGCTTTTGGGGGTTGTCCAAAGACTGCTTTGATGTATAATAGGCAGGTAACATTCCACTGATTACACTCGAGGAATTGCTGGACACCTTGTCTGGAGAAGTCGCCAAGATGATGTCATAATACGTATTGTTCCAGCAAAATGTGGATATTTTTTGTTTGTTTTTTCGTGTTTATTTTTTGTATCTTATGTTCAGTAACTCCCTTTTATGGCTTTACAAGCTATATGACTGGATTTTGTTGGTCGTGGATGTTTTTGTCGTGTTCTATCATTTTTCAGTTAAAGTTGCATGATATAGTGATTCAGTTTTGTTCTTACGAATTATGTTCAACTTATACGTTTATCATTTATCTGCTATTTTCCTATCTTTTTATACTTTTATTTTTTATGACTATCTTTTCATTCATTTG

Coding sequences of Glyma19g39170

Limit To All Plant Sequences

>Glyma19g39170.2   sequence type=CDS   gene model=Glyma19g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGCCAATTCCATGCTCTCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGGTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAATTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCGCTCCTTGTGGCACTGAAAGTTCGGTATCCCCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCTGAAATATTCTGTTTGCATGGTGGACTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGCCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACTAACAGCCTTAAATTGATTGCTAGAGCTCATCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGTCACACATTCATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAA

>Glyma19g39170.3   sequence type=CDS   gene model=Glyma19g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGCCAATTCCATGCTCTCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGGTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAATTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCGCTCCTTGTGGCACTGAAAGTTCGGTATCCCCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCTGAAATATTCTGTTTGCATGGTGGACTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGCCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACTAACAGCCTTAAATTGATTGCTAGAGCTCATCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGTCACACATTCATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAA

Predicted protein sequences of Glyma19g39170

Limit To All Plant Sequences

>Glyma19g39170.2   sequence type=predicted peptide   gene model=Glyma19g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGANSMLSESSHDLDDQISQLMQCKPLSEQQVRGLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL*

>Glyma19g39170.3   sequence type=predicted peptide   gene model=Glyma19g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGANSMLSESSHDLDDQISQLMQCKPLSEQQVRGLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL*

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