SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11950 | AT | Annotation by Michelle Graham. TAIR10: TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572 | SoyBase | E_val: 2.00E-170 | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004659 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10131 | Panther | TNF RECEPTOR ASSOCIATED FACTOR | JGI | ISS | |
| PF02176 | PFAM | TRAF-type zinc finger | JGI | ISS | |
| UniRef100_Q9SF04 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F26K24.24 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SF04_ARATH | SoyBase | E_val: 1.00E-167 | ISS |
| UniRef100_UPI000233E308 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E308 related cluster n=1 Tax=unknown RepID=UPI000233E308 | SoyBase | E_val: 0 | ISS |
|
Glyma19g39140 not represented in the dataset |
Glyma19g39140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36481 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g204100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39140.1 sequence type=CDS gene model=Glyma19g39140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGATATTATCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAAAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCCAGTGCTTGTGTTGATAACACATCGGGAGATCTCTTCAAGACTCCGGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGAGTATGTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTGGTCCAGACGGTGAAGAATCAGACCATCCTTTTGATATCATTTCTGATTTCGTTGATGACTTTGTGAGTTCAAAGAGGAATCTGTTTAGTCGAGTTTCGGGATGGTTGCTGAGTGAAAAGAGGGAAGACAGAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGACAGGAGAGAAACAATTGCAGAAACTTTGCTCAAGAATGTTGACTTTGAGAACTCATATCATTGCAACATGAGTTTTAATTCTGCTGAAGAACTTGTCAATCATGTTGATAACTGCAACTTTAGAACTATGATATGTGAAAATGAGGGATGCAATTCCAGATTTTGTGCAGCTCATTTGAAGAATCATGATTCAACTTGTCCTTTCAAGATAATTCCATGTGAACAGAAGTGTTCTGATTGCATTATGAGACGTGAGATGGATAGGCATTGTATAACTATTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGTTGTGGGTTGTAGGTCAGCTGTTGCACAATGTATGATTGAAAAACATCGTTTAGATGACGTTCATTCTCACTTGTGGCACTTACTTAAAGGCATCTACAAGCAAGCATATGGGGATGATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTAAACTTCATTGTCAAGGACATTGAAGCTAAGTTAGGACCTTTCAAAGTGAGTGTTTTGGAGAAAAATAATGCAGAGATTGTTACCAAGAATGACGAAGGGGAAGCTGGTGACACTGAAAAGAGCATGAAGGCTTCAGATATGGTCAATTCACCAGATAAAGCTGAATTGAGTGACATGAAAAATATGAATAATGCAAAGAGTACTACCAAGAATGAAGATAGGGAACCTGTTCCTGTTGAAAATAAAGGTTGTGAAGAGATGGCACAAACTTCAAACACGACAAATTTATCTGATAAAACTGAAGTTGGCCTCCCGAATGATGAGAACAAAGATGCTGCAGCTAGTGAATTAAAAATCAAGGGGGACGAAGAGCACACTCAAACACATAAGGAAAAATTATCAAATGAAGAAGTTAGTGCCCCAGATGAGGGCAGTGCAGAGAATATCATCAAAAGCAAATGTAATGAAGACAATAAATTTGAAGATAAAGACAACGAACAAAGCATACAAAATTCAAAAATGGAAACCAAGGGTGGTTTAGAGAATAATGTTAAGAACAAAGATGGTGACTTAAAAAAGAGCGCACAGACTTCAGACGGGTAA
>Glyma19g39140.1 sequence type=predicted peptide gene model=Glyma19g39140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILSSMDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKEMIEYVTQRSESFVAESVILEGGPDGEESDHPFDIISDFVDDFVSSKRNLFSRVSGWLLSEKREDRIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENSYHCNMSFNSAEELVNHVDNCNFRTMICENEGCNSRFCAAHLKNHDSTCPFKIIPCEQKCSDCIMRREMDRHCITICPMKLVNCPFYVVGCRSAVAQCMIEKHRLDDVHSHLWHLLKGIYKQAYGDDLKRRVEQIVQASSSSRLAEARDVRSLNFIVKDIEAKLGPFKVSVLEKNNAEIVTKNDEGEAGDTEKSMKASDMVNSPDKAELSDMKNMNNAKSTTKNEDREPVPVENKGCEEMAQTSNTTNLSDKTEVGLPNDENKDAAASELKIKGDEEHTQTHKEKLSNEEVSAPDEGSAENIIKSKCNEDNKFEDKDNEQSIQNSKMETKGGLENNVKNKDGDLKKSAQTSDG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
