Glyma19g39131 - SoyBase

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Report for Sequence Feature Glyma19g39131

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45905452
stop:	45912064
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39131

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58460	AT	Annotation by Michelle Graham. TAIR10: RHOMBOID-like protein 15 \| chr3:21623374-21626348 REVERSE LENGTH=403	SoyBase	E_val: 0	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
KOG2632	KOG	Rhomboid family proteins	JGI		ISS
PTHR22790	Panther	RHOMBOID-RELATED	JGI		ISS
PTHR22790:SF7	Panther	RHOMBOID-RELATED	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
PF01694	PFAM	Rhomboid family	JGI		ISS
UniRef100_B9T029	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid protein, putative n=1 Tax=Ricinus communis RepID=B9T029_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JQD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQD8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39131

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39131 not represented in the dataset	Glyma19g39131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39131

Paralog	Evidence	Comments
Glyma03g36460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39131 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g204000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39131

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39131

Limit To All Plant Sequences

>Glyma19g39131.1   sequence type=CDS   gene model=Glyma19g39131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGAGCAAGAAATATGAGACCAAACATCGTTTCTGAGGCCGGGTTGCCTACTAGGATGAGTCAATGGTGGGAAAGCATTCCGTTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAATCATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTCAACGAGGTTTGCTTCTTGCCGTCTGCGGTTGTTTCGCGGTTTCAAGTTTACCGGATTTATACCTCCATTCTTTTCCACGGTTCACTGCTTCATGTTGTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTTTATGTCATTATTTTGGTGGCTACAAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGTGGCACACAATCCTTTACTTACATATGATTACCTCATGAATGAGTGTGCGATAGGCTTCTCAGGAGTTCTGTTTTCAATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCGAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTTCTTGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAATCCTCCTCTTGGCTTTCATCATGTGTGAGACGTCCAAAATTTATTGTTTGCACTGGTGGAAATCCTTCGGGTTATATTCCTACACAGACAAGCCAAAATTCAACAACCAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCATCATTTATGCCTCAAAGGGAAGTGTCTGCTCAGTCAACAGAGGATATTAGGTTCCCCGGGAGGGGAAGGACCCTTGGTGCCGTTCAAGGTCAAACTGCTTCTCATCTCCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAGTCCTTTAGATTCATCCACTCCTAGTAATACTCAACAGTTGTCAGAAGGAAGGCATTCAGTTGACGATGTAGCTACAGCAGCTGCTGGTGTTCCACAGAATCAGGGTGCAGTTGTTTCGGAAGAAAGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCGCTGGCTGCTGCTGATGGTGATCTCAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTGA

Predicted protein sequences of Glyma19g39131

Limit To All Plant Sequences

>Glyma19g39131.1   sequence type=predicted peptide   gene model=Glyma19g39131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRARNMRPNIVSEAGLPTRMSQWWESIPFLTSAVVVVCGIIYLVCLLVGYDSFNEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTQTSQNSTTSGLLSGNIWRNLSSFMPQREVSAQSTEDIRFPGRGRTLGAVQGQTASHLHSDSNLQARLLEDSSPNSPLDSSTPSNTQQLSEGRHSVDDVATAAAGVPQNQGAVVSEERIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG*

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