Glyma19g39121 - SoyBase

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Report for Sequence Feature Glyma19g39121

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45900206
stop:	45903123
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06600	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 \| chr5:2020682-2027834 REVERSE LENGTH=985	SoyBase	E_val: 1.00E-33	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
KOG1987	KOG	Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains	JGI		ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_G7LEE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR	SoyBase	E_val: 1.00E-53	ISS
UniRef100_I1JQD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQD7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39121 not represented in the dataset	Glyma19g39121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39121

Paralog	Evidence	Comments
Glyma03g36450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g203900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g39121

Limit To All Plant Sequences

>Glyma19g39121.2   sequence type=transcript   gene model=Glyma19g39121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAAGTATAAACTTAGCTTCCTTCCTTTCAAGACAAATGTGGTTGACTTGACTTCACTCTCATTATTTCAGTTCTTCCCTTTTTTTTCTTACTTCCATTATTCCCGGTCCTCACATTCACGACCAGCATAATTGTACATTTTTCCATTGCCCCGGCAACGTTGGTGACGAGTGACGACCCTTTGAGTAGCTTGGGCAAATATTTTGGTCAACAAATATTTTTCTGCAATATCAGTGTTTTCCATTCCATATCAAATTTCAATCCTTTAGGAGTTTCCTTCCACTCAGATGTAGCTACTAGAATGGACAATCAGAAGGGAATGAGTATTAGTTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAGAACACCAAGAAACTACAATCCAAGACTTTCCGAATCCGAGGTTATAAATGGCGGATTCGTTTGTATCCATTAATGAAGAATGTTGACCATTTTTCATTGTATTTGATGGTTGCGGATTCTTTACCTCCGTATGGATGGAACAGAAATACGCATTTCAAGTTGGCTCTAGTTAATCAATTGGATGGCAATAAGTCAGTTGTAAAGGAGACTCAGCAGAAGTTCAACGGTGGATATCGTAGCTGGGGCTCATTTTTTGTGAATCTTAGTGACTTCTATGACTCTAAACAAGGCTATCTTCTGAATGACACATGCATCATTGAAGCTCATGTTTGTTTCTCAGATCTTAGCACTCTTGAAGCTAACAATTTGAAGAAAATCACTCCAACCAAAGACTCTAAATCAGGTGATCAAGCAGCAAGAAATTCAGAATCCACACAGCAGGGAGATGATAAAGAAGCAGAAACAGAAATAGAAACAGAAATATCAGATGAGAGTGAGACATTTAGTTCTTCAACCTGTGGGTCTAGTGAAACAGAATGGGAAATTCAAAGTTCAGATTTGACACTAAAAGACCTTCTAGATTTGGCGAGTTTAGGAAAAGAAGAAGCTGCTTGTGTTCCACTGTTGGAGGAAGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGGAAAAGTTCAAGATGGTTCAAACTATGGGCATTCACATCTTTAGGCCAAGTTCTGCATTTACTCAAGACAAGTAAGGTGAAGGATATGAATGAGGAAGCATGCAATCGCCTTCAAGGGTTATGGGAGGAACTTGTTAAGCATTCTGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGATATGAAAACTCATTTGGATAAAACAGATGAAGTGAATAAACTCAAAGACAGTGTGGTTGCTTTGGAGATTAAAATGAAGAAGCTGAGGGAAGAATTGGTAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGGGCCTTGGCTGAGGCAAGAAAAGGTTTCATAGAGATGGATTTGAATGCTGATTTAGGTTATGCCATGTTTTAGCACATTGCATATATAGTGATTAGTGAACTTGATTTTTCTCCCAAGTTCCACTTCCTTGCAAATTATGGTGGGAAATGCCTTGGGCGCTAGTTGCTAATACTTCTCTATATGTATTATTATCTGTCAAAGTTTGAAGGGTTCAGACTTCAGAGTAACATATAGAACACGACCACTAATTTTAAGGGTTCAAAAGTTTAATGTATTTTTTTATAGAAAAAAATACCGTCTCTCTATTTCATAATATGATCATATTATGGAATGTATTTTTATATTTTATAATTGTACTTTTTTATTTTTATTTTTTAGAAGCCTATTTTTTAGAATTAGTAATTTAGTACATGTTCTCCACGACAGCCCTGGTTTCAAGCTTCGATGTAATATAGTAAGACAATCATGTCCTTTTATTTTTATTTTTTATACAGTAACACATTGTCGATGGCTTGTGGATCAAAAGCAAATTTACCGATTAAAGTTTATTTTAGATGAA

Coding sequences of Glyma19g39121

Limit To All Plant Sequences

>Glyma19g39121.1   sequence type=CDS   gene model=Glyma19g39121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATCAGAAGGGAATGAGTATTAGTTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAGAACACCAAGAAACTACAATCCAAGACTTTCCGAATCCGAGGTTATAAATGGCGGATTCGTTTGTATCCATTAATGAAGAATGTTGACCATTTTTCATTGTATTTGATGGTTGCGGATTCTTTACCTCCGTATGGATGGAACAGAAATACGCATTTCAAGTTGGCTCTAGTTAATCAATTGGATGGCAATAAGTCAGTTGTAAAGGAGACTCAGCAGAAGTTCAACGGTGGATATCGTAGCTGGGGCTCATTTTTTGTGAATCTTAGTGACTTCTATGACTCTAAACAAGGCTATCTTCTGAATGACACATGCATCATTGAAGCTCATGTTTGTTTCTCAGATCTTAGCACTCTTGAAGCTAACAATTTGAAGAAAATCACTCCAACCAAAGACTCTAAATCAGGTGATCAAGCAGCAAGAAATTCAGAATCCACACAGCAGGGAGATGATAAAGAAGCAGAAACAGAAATAGAAACAGAAATATCAGATGAGAGTGAGACATTTAGTTCTTCAACCTGTGGGTCTAGTGAAACAGAATGGGAAATTCAAAGTTCAGATTTGACACTAAAAGACCTTCTAGATTTGGCGAGTTTAGGAAAAGAAGAAGCTGCTTGTGTTCCACTGTTGGAGGAAGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGGAAAAGTTCAAGATGGTTCAAACTATGGGCATTCACATCTTTAGGCCAAGTTCTGCATTTACTCAAGACAAGTAAGGTGAAGGATATGAATGAGGAAGCATGCAATCGCCTTCAAGGGTTATGGGAGGAACTTGTTAAGCATTCTGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGATATGAAAACTCATTTGGATAAAACAGATGAAGTGAATAAACTCAAAGACAGTGTGGTTGCTTTGGAGATTAAAATGAAGAAGCTGAGGGAAGAATTGGTAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGGGCCTTGGCTGAGGCAAGAAAAGGTTTCATAGAGATGGATTTGAATGCTGATTTAGGTTATGCCATGTTTTAG

>Glyma19g39121.2   sequence type=CDS   gene model=Glyma19g39121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATCAGAAGGGAATGAGTATTAGTTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAGAACACCAAGAAACTACAATCCAAGACTTTCCGAATCCGAGGTTATAAATGGCGGATTCGTTTGTATCCATTAATGAAGAATGTTGACCATTTTTCATTGTATTTGATGGTTGCGGATTCTTTACCTCCGTATGGATGGAACAGAAATACGCATTTCAAGTTGGCTCTAGTTAATCAATTGGATGGCAATAAGTCAGTTGTAAAGGAGACTCAGCAGAAGTTCAACGGTGGATATCGTAGCTGGGGCTCATTTTTTGTGAATCTTAGTGACTTCTATGACTCTAAACAAGGCTATCTTCTGAATGACACATGCATCATTGAAGCTCATGTTTGTTTCTCAGATCTTAGCACTCTTGAAGCTAACAATTTGAAGAAAATCACTCCAACCAAAGACTCTAAATCAGGTGATCAAGCAGCAAGAAATTCAGAATCCACACAGCAGGGAGATGATAAAGAAGCAGAAACAGAAATAGAAACAGAAATATCAGATGAGAGTGAGACATTTAGTTCTTCAACCTGTGGGTCTAGTGAAACAGAATGGGAAATTCAAAGTTCAGATTTGACACTAAAAGACCTTCTAGATTTGGCGAGTTTAGGAAAAGAAGAAGCTGCTTGTGTTCCACTGTTGGAGGAAGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGGAAAAGTTCAAGATGGTTCAAACTATGGGCATTCACATCTTTAGGCCAAGTTCTGCATTTACTCAAGACAAGTAAGGTGAAGGATATGAATGAGGAAGCATGCAATCGCCTTCAAGGGTTATGGGAGGAACTTGTTAAGCATTCTGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGATATGAAAACTCATTTGGATAAAACAGATGAAGTGAATAAACTCAAAGACAGTGTGGTTGCTTTGGAGATTAAAATGAAGAAGCTGAGGGAAGAATTGGTAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGGGCCTTGGCTGAGGCAAGAAAAGGTTTCATAGAGATGGATTTGAATGCTGATTTAGGTTATGCCATGTTTTAG

Predicted protein sequences of Glyma19g39121

Limit To All Plant Sequences

>Glyma19g39121.1   sequence type=predicted peptide   gene model=Glyma19g39121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNQKGMSISFETFTWKIENFSKQNTKKLQSKTFRIRGYKWRIRLYPLMKNVDHFSLYLMVADSLPPYGWNRNTHFKLALVNQLDGNKSVVKETQQKFNGGYRSWGSFFVNLSDFYDSKQGYLLNDTCIIEAHVCFSDLSTLEANNLKKITPTKDSKSGDQAARNSESTQQGDDKEAETEIETEISDESETFSSSTCGSSETEWEIQSSDLTLKDLLDLASLGKEEAACVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTSKVKDMNEEACNRLQGLWEELVKHSGFQLSWLEPYVQSALDMKTHLDKTDEVNKLKDSVVALEIKMKKLREELVAAEAEFEVARRALAEARKGFIEMDLNADLGYAMF*

>Glyma19g39121.2   sequence type=predicted peptide   gene model=Glyma19g39121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNQKGMSISFETFTWKIENFSKQNTKKLQSKTFRIRGYKWRIRLYPLMKNVDHFSLYLMVADSLPPYGWNRNTHFKLALVNQLDGNKSVVKETQQKFNGGYRSWGSFFVNLSDFYDSKQGYLLNDTCIIEAHVCFSDLSTLEANNLKKITPTKDSKSGDQAARNSESTQQGDDKEAETEIETEISDESETFSSSTCGSSETEWEIQSSDLTLKDLLDLASLGKEEAACVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTSKVKDMNEEACNRLQGLWEELVKHSGFQLSWLEPYVQSALDMKTHLDKTDEVNKLKDSVVALEIKMKKLREELVAAEAEFEVARRALAEARKGFIEMDLNADLGYAMF*

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