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Report for Sequence Feature Glyma19g39111

Feature Type:gene_model
Chromosome:Gm19
Start:45897548
stop:45899560
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g39111
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06600AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985 SoyBaseE_val: 3.00E-32ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
PF00917PFAM MATH domain JGI ISS
UniRef100_G7LEE7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR SoyBaseE_val: 4.00E-50ISS
UniRef100_I1JQD7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQD7_SOYBN SoyBaseE_val: 3.00E-164ISS

Expression Patterns of Glyma19g39111
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39111 not represented in the dataset
Glyma19g39111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g39111 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g203800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g39111
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g39111
>Glyma19g39111.1   sequence type=CDS   gene model=Glyma19g39111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATAAGAGGAGACCGAGTATTAATTTTGAGACCTTCACGTGGAAAATTGAAAATTTCTCTAGACAGAACACCAATAAACTAAAATCCAAGGCTTTCCAAATCCGAGGTTATAAATGGCAGATTCGTTTGTATCCATTAGTGAAAAATGTTGACCATTTTTCATTACATTTGATGGTTGCGGATTCTTTACCACCGTATGGATGGGACAGAAATACGTATTTCAAGTTGGCTCTAATTAATCAATTGGATGGCAGTAAATCAGTGGTAAAAGAGACTGAACAGAAGTTCAAAGGTGGATTTCGTGAGTGGGGCTCATTTTTTGTGAATCTTAGTGACTTCTATGACCCTAAACAAGGCTATCTTGTGAATGATACATGCATCATTGAAGCTCATGTTTGTGTCTCTGATCTTAGCACTCTTCAAGCTAACAACTTGAGCATAATTACTCCAACCAACGACCTTAAATTTGGTGATCAATCAGCAAGACATTCAGAAACATCAGAAGGGGAAGTTCAAGGTTCAGATTTGACACTAAGGGACCTTCTAGATTTGGAGTGCTTAGCAAAAGAAGGAGCAGATTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGTAAAAGTTCTAAACTGTTCAAACAATGGGCATTCACATCTTTGGGTGAAGTTCTGCATGTACTCAAGATAAGTAAGGTGAAGGATATGAATGAAGATGCATTCAATCACCTTCAAGGTTTATGGGAGGAACTTGTTAAGCGGTCCGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGCTATGAAAGCTCAGGTGGAAAAAGCAGCTGAAGTGAATAAACTCAAAGACAATGTGGTTGATTTGGAGGTTAAAATGAAGAAGTTGAGGGGAGAGTTGAAAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGAGCCTTGGCTGAGGCAAGAAAAGGTTTCATAGAGATAGAGGTGGATTTGAATGCTGAATTAGGCTATGCCATGTTTTAA
Predicted protein sequences of Glyma19g39111
>Glyma19g39111.1   sequence type=predicted peptide   gene model=Glyma19g39111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNKRRPSINFETFTWKIENFSRQNTNKLKSKAFQIRGYKWQIRLYPLVKNVDHFSLHLMVADSLPPYGWDRNTYFKLALINQLDGSKSVVKETEQKFKGGFREWGSFFVNLSDFYDPKQGYLVNDTCIIEAHVCVSDLSTLQANNLSIITPTNDLKFGDQSARHSETSEGEVQGSDLTLRDLLDLECLAKEGADFVPLLEEACIWHPSLIRSQSKSSKLFKQWAFTSLGEVLHVLKISKVKDMNEDAFNHLQGLWEELVKRSGFQLSWLEPYVQSALAMKAQVEKAAEVNKLKDNVVDLEVKMKKLRGELKAAEAEFEVARRALAEARKGFIEIEVDLNAELGYAMF*






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