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Report for Sequence Feature Glyma19g39101

Feature Type:gene_model
Chromosome:Gm19
Start:45893184
stop:45895683
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g39101
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11910AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1115 SoyBaseE_val: 3.00E-41ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
PTHR24006Panther FAMILY NOT NAMED JGI ISS
PTHR24006:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF00917PFAM MATH domain JGI ISS
UniRef100_G7LEE7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR SoyBaseE_val: 3.00E-63ISS
UniRef100_UPI0002337B37UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337B37 related cluster n=1 Tax=unknown RepID=UPI0002337B37 SoyBaseE_val: 1.00E-103ISS

Expression Patterns of Glyma19g39101
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39101 not represented in the dataset
Glyma19g39101 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g39101 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g203700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g39101
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g39101
>Glyma19g39101.1   sequence type=CDS   gene model=Glyma19g39101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACCAGCAGGTGAAGGGTGTTGCTTTGGAGAAATTCACATGGAAGGTTGAAGGTTTCACCAAATTGAATACCAAGAAACAGTCCTCCAAGGCTTTCAAAGTTGGCGGTTATAAATGGAAGATTGTTTTGTATCCTAAGGGGAGGAATGTGGAGTATTTGTCCTTGTATATGAAGGTTGCTGATTCTCTACCACCATATGGATGGAGCAGATTTGTATATTTCAGGTTGGCTCTTATTAACCAGGTGGATAGCAAGAAGTCAATTGTAAAGGAAACCCAGCAGAAGTTTAATGCTGGAAACAGTGCTTGGGGTTCTCCATCTTTCATTCCTCTCAGTGAATTCCATGACCTTGCTCAAGGTTATCTTGTGAAAGATGCATGTATAATTGAAGCTCAAGTTTTAGTCTCTAAGGTCGCATTTAACATTCCAGGCAGCTTAGCCCAAAGCATTACGACAATTCATGAACCTAATGGAGATCAAGCTAGGCTAACAGAAGTGGAAATGACACCTTCAGATTTGACATCAAGTCCTACAAGTACCCAAGGTTCTAAAGATGATCACGTAAATGAAATAGAACTGCAACTCATACACTCAGAAGATCAAGAAATAGGACCCTCAGCCTCAGATTTCACTCCAAGTCCTAAACAAGTTCAATTTGCTCCTAGTGCTCCCCCTATGTATCCTTCTTTATTTGATGAATCTGAGCAAGTGATCTTAACCCCTCTAAGTGACCTTATAGATTTCAATAGTGTAGAGGCAGAAGAAGCATCCTTTATTCCATTATGGGAGGAGGTATGTTCATGGCATCCATCACTAATAGAGAATCAAAGAAGGAGAAGTCCCAGGTTCATATTGTGGGCATTCATTGCCTTGGGACGAGTGCTACATTTCCTTAAGACTAAGACAATTAGGGATATGGGTAATGATGATTGTATGATGCACCTTCAAGTTCTATGGGAAGAACTTCAACCCTTTGGATTTGACTTGACATGGCTAGAGCCCCATGTTCAATCAGCAATGAGTGCAAAAGCTTATTTTGAAAGAGGAGAGTACGTGAAAAGTATAAGGGTCAATATAGCTTCTTTAGAGATAGAATTGAAGAAGCTGAAGACTAAACTGGCTGTTGCAGAACTTGACCTTGAGGTTGCAAGGAGAGACTTGGCAGAGGTAGAAAATGATTTCCAGGAGAGGGACATGGATGCTGAACTTGGTTATGGGATACCATAG
Predicted protein sequences of Glyma19g39101
>Glyma19g39101.1   sequence type=predicted peptide   gene model=Glyma19g39101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENQQVKGVALEKFTWKVEGFTKLNTKKQSSKAFKVGGYKWKIVLYPKGRNVEYLSLYMKVADSLPPYGWSRFVYFRLALINQVDSKKSIVKETQQKFNAGNSAWGSPSFIPLSEFHDLAQGYLVKDACIIEAQVLVSKVAFNIPGSLAQSITTIHEPNGDQARLTEVEMTPSDLTSSPTSTQGSKDDHVNEIELQLIHSEDQEIGPSASDFTPSPKQVQFAPSAPPMYPSLFDESEQVILTPLSDLIDFNSVEAEEASFIPLWEEVCSWHPSLIENQRRRSPRFILWAFIALGRVLHFLKTKTIRDMGNDDCMMHLQVLWEELQPFGFDLTWLEPHVQSAMSAKAYFERGEYVKSIRVNIASLEIELKKLKTKLAVAELDLEVARRDLAEVENDFQERDMDAELGYGIP*






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