SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06590 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2016713-2018744 FORWARD LENGTH=314 | SoyBase | E_val: 3.00E-69 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1NAY3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAY3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QLZ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2QLZ2_ORYSJ | SoyBase | E_val: 4.00E-34 | ISS |
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Glyma19g39090 not represented in the dataset |
Glyma19g39090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g203500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39090.2 sequence type=transcript gene model=Glyma19g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAATGCAATTGGCAGAGACAGAGAGGAAGAAGACGATGGCGGAGGATCCGATTTCTAGCTTCTGCAACGCATTGGCAGCTTTCTGCGGCCACCTCCACTCCTCTTCCGATGCCCTCAAACAATCCATCGATCGCCGACCTATTCCTCTCGATTCCGCCTCGTCGACCTTCTTGCAATGCCTCAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGTACAGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCCTTCAACTTCAAGATCGCCTCCAGAGCTACGGTTATAGTGCTGTTCCTGATATTGAGGAGGCGGATGAAGATGAGGATATACAACGTCAAGATCCGGAAGACAAATTGGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTCGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAAGTTTGGGCTGTCAGATACATGTCTAGCCATGTTAGCATCTAAAGGTGATTTTTCACCACAAAAACCTGAGAAAGTACAAGAATTTAAGCAGCAACATCATCATGATGCGGAGACTGAAGGAAGTAACTTCTTATCTGATGAGAAAGACAAAGAGAATATAAAGTCAGCTGAAGCTCCCAGCCCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGACTAACATCATGGGAGGATCTAGTCGTGGCTGTTGATAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTCCTAAAACAAGATCATATTTGCTGCTTCTAGTGCGCATGAACCGATTGGTTGTTGAGACGATTGATGGTTTACTATCGTACAGAGTATTGTAGATACGAGGTCCAATGGAGAACTATATTTTTCATCTCCTAGTTCACCTTTTCGTTGGCATTCATATTCCAAGAAGCACGGACCCGGAACACGAACACAGCACATAACTAAGCATAATAGTGCCATTGTTTGAAGTGTTTGGACATCTGGTGTTTTTAAAATTCTCTGTTCCATTCCCTCTTATTTGAGGCTGAGAATGGTTGATATCCACATATTCCTTCTATTTGTAACGACAAAGATAGAATAATCTTATTGTTCTTTGTTATTGACGATAATGTAATGTGATGCTTGATCTTGTATAGAATTTTTTTCTTTTGGGGTAAATTACTTTACCTCCTTGGCGTCACGCCTTCCCACTCAACCCTTTTATATGC
>Glyma19g39090.1 sequence type=CDS gene model=Glyma19g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGGCAGAGACAGAGAGGAAGAAGACGATGGCGGAGGATCCGATTTCTAGCTTCTGCAACGCATTGGCAGCTTTCTGCGGCCACCTCCACTCCTCTTCCGATGCCCTCAAACAATCCATCGATCGCCGACCTATTCCTCTCGATTCCGCCTCGTCGACCTTCTTGCAATGCCTCAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGTACAGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCCTTCAACTTCAAGATCGCCTCCAGAGCTACGGTTATAGTGCTGTTCCTGATATTGAGGAGGCGGATGAAGATGAGGATATACAACGTCAAGATCCGGAAGACAAATTGGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTCGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAAGTTTGGGCTGTCAGATACATGTCTAGCCATGTTAGCATCTAAAGGTGATTTTTCACCACAAAAACCTGAGAAAGTACAAGAATTTAAGCAGCAACATCATCATGATGCGGAGACTGAAGGAAGTAACTTCTTATCTGATGAGAAAGACAAAGAGAATATAAAGTCAGCTGAAGCTCCCAGCCCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGACTAACATCATGGGAGGATCTAGTCGTGGCTGTTGATAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTAGTTCTTATCCTTTTTCTTATTCGAATCCATTGCAAAATAGTAATTTTTCCCATAACAAGATCACTCCACCAAAGCCAATATTATTTTATAACATTTCATAA >Glyma19g39090.2 sequence type=CDS gene model=Glyma19g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGGCAGAGACAGAGAGGAAGAAGACGATGGCGGAGGATCCGATTTCTAGCTTCTGCAACGCATTGGCAGCTTTCTGCGGCCACCTCCACTCCTCTTCCGATGCCCTCAAACAATCCATCGATCGCCGACCTATTCCTCTCGATTCCGCCTCGTCGACCTTCTTGCAATGCCTCAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGTACAGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCCTTCAACTTCAAGATCGCCTCCAGAGCTACGGTTATAGTGCTGTTCCTGATATTGAGGAGGCGGATGAAGATGAGGATATACAACGTCAAGATCCGGAAGACAAATTGGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTCGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAAGTTTGGGCTGTCAGATACATGTCTAGCCATGTTAGCATCTAAAGGTGATTTTTCACCACAAAAACCTGAGAAAGTACAAGAATTTAAGCAGCAACATCATCATGATGCGGAGACTGAAGGAAGTAACTTCTTATCTGATGAGAAAGACAAAGAGAATATAAAGTCAGCTGAAGCTCCCAGCCCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGACTAACATCATGGGAGGATCTAGTCGTGGCTGTTGATAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTCCTAAAACAAGATCATATTTGCTGCTTCTAGTGCGCATGAACCGATTGGTTGTTGAGACGATTGATGGTTTACTATCGTACAGAGTATTGTAG
>Glyma19g39090.1 sequence type=predicted peptide gene model=Glyma19g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLAETERKKTMAEDPISSFCNALAAFCGHLHSSSDALKQSIDRRPIPLDSASSTFLQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLLQLQDRLQSYGYSAVPDIEEADEDEDIQRQDPEDKLDSPSSFYGSLSVADSSFKSFEEDALLDESLSLKKFGLSDTCLAMLASKGDFSPQKPEKVQEFKQQHHHDAETEGSNFLSDEKDKENIKSAEAPSPILKILKSEFECLPAYMKGLTSWEDLVVAVDKINSSLSKKTNGCSYFHQDEIPSFELGSSYPFSYSNPLQNSNFSHNKITPPKPILFYNIS* >Glyma19g39090.2 sequence type=predicted peptide gene model=Glyma19g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLAETERKKTMAEDPISSFCNALAAFCGHLHSSSDALKQSIDRRPIPLDSASSTFLQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLLQLQDRLQSYGYSAVPDIEEADEDEDIQRQDPEDKLDSPSSFYGSLSVADSSFKSFEEDALLDESLSLKKFGLSDTCLAMLASKGDFSPQKPEKVQEFKQQHHHDAETEGSNFLSDEKDKENIKSAEAPSPILKILKSEFECLPAYMKGLTSWEDLVVAVDKINSSLSKKTNGCSYFHQDEIPSFELGPKTRSYLLLLVRMNRLVVETIDGLLSYRVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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