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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54720 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M28 family protein | chr3:20254852-20257815 REVERSE LENGTH=705 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004180 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxypeptidase activity | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| GO:0016805 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dipeptidase activity | SoyBase | N/A | ISS |
| KOG2195 | KOG | Transferrin receptor and related proteins containing the protease-associated (PA) domain | JGI | ISS | |
| PTHR10404 | Panther | GLUTAMATE CARBOXYPEPTIDASE | JGI | ISS | |
| PTHR10404:SF15 | Panther | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE-RELAT | JGI | ISS | |
| PF04253 | PFAM | Transferrin receptor-like dimerisation domain | JGI | ISS | |
| PF04389 | PFAM | Peptidase family M28 | JGI | ISS | |
| UniRef100_B9SDP7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferrin receptor protein, putative n=1 Tax=Ricinus communis RepID=B9SDP7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E306 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E306 related cluster n=1 Tax=unknown RepID=UPI000233E306 | SoyBase | E_val: 0 | ISS |
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Glyma19g39080 not represented in the dataset |
Glyma19g39080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g203400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g39080.2 sequence type=transcript gene model=Glyma19g39080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCTGTGTATAATATATAAATAAAAATAAAAATTTGATACGATCCTAATTAGTTTTCAAAATTCAACTCACCTTAACAATTATTCAAAAATGCATATAGTATAAAAAAAATGGTTCATGAAACCAATATTTTGATGTGAGTAGTGACTAGGGTTGCTGTCCTGGACAAACTTGGATTGTTCCGGGGACAAATAGCATTGTGAATCGAACCTCCACCGTGCATGGATCCACACACAGTACTACCTCCGTCACTGTCATCCACCTCTTCCCATCCTTATAATAATAAATCACAAGACGCATCCCCTTTTCCTAAAGATCACCATCATTTCATTTCCCATATAAAAAGGCACACGAAGTGTTAGTAATAATAATAATAATAATAATAATAATAATAGTAATATTCTTTCTCCCCTAATAAACAGAGCCTGCTCTGTTTCTTATTCTTCTTCATCACAAAATGATGCCGAAACCGATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATCCTCTGCATTCTGGGTTTCTACGCTCTGCATTTGCCTCACTCTTCCACACCTTCCTTCACTTCCAAAAGCCTTTCTCAATTGGAAAAACTTTTTCTTTCCACTTCCTCAAACTCTACCATTTCTTCCTACCTCCGCGCTCTTACCCTGCACCCTCACCTCGCCGGAACAAAACCCGCTTCAGACACAACCCGCCACGTTCTCAACCACTTCACTTCATTGGGCCTACAGGCCCATACAACAACGTACACCACTCTCCTTTCCTTCCCCGTGCGCTCTTCCCTCTCGGCGCACTTTAGCGATGGCGCTTCGGTAAGCCTGCGGCTCACCGAAGCGTCGGGGCCGGGGGTGGTGGCGGCGTACCACGCGTACTCGCCGTCGGGCAAGGTGCACGCGCGGGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCTCGCGCTGGCGGCGATGGGAGTGAACGTGAGCGGCTGCGTGGTGGTGGTGCGTAAGGGCGGAAGGATGGGGCGGGGCGCGGTGGTGGAGAGGGCGGAGGCGAACGGCGCGGCGGCGGTGCTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGACATGTGATGAGAGGGGGGATAGGGGACCCACTTACTCCAGGGTGGGCTGGGGTTGAGGGTGGTGAGACACTGGGGTTGGAAGATGGTGAGGTTTTGAAGAGGTTTCCTAAAATTCCATCTATGCCCTTGTCAGCTGAGGTGGCTGATATTATTTTGTCCTCTCTTGGGGGAGTTCCTCTGCCCCTTCAATGGAGGGGTACCCTTAAGTCTATGGTCAGGAATGTTGGTCCTGGCCCCACCATTCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCCGTCATAAAGGGATCGGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTCGATATTGCTCGTCGATTTTCTGCTCTATTGGGCTTGGGTTGGAAGCCGAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGACTCTGAGGGGGTATCATTATATGAAAATTGGGCTGCTGCTGCTGGTGGAGGCAATAATATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAGATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACACCCATTAACCCTTTCAATTGAAGAATTTGCTTCTGCTGCCAAAGAAGCCAATGATGAATTAAAGAAACTGAGATTGCAAGAAAGTGAAAGTTGCTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTCGTGTTTGGGCCTTCAAGCAACCATGAAAAGTTGAATTTCTTCCCAGGGATTTCTGATTCTATCACTAGATTGTCGGGTATAAGTGAAAGAGAAAGGCTATCATCAATCCAACACGAGATTTGGAGGGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCAGTGGAGAATTCACCTAAAAACTAATGGGAAAAAGAAAAACTCATTTAGAGGAGAATGGAGATTGATGAAATCTTACCTGTAAATATATTAGCGTTTCTTTTTAACACGAGCAGAGTAGTTAGCTTAGCTGCATTTTGTGGTACATAACTGTACATTAAGTTTTCAAATAGGAGATGGATAGATAGATATGCCAGCAGTTGAAGACATGCACACGGTGATTGCATATTTTGTGCTTATAATGAATGATCTGCACAAGTTTTCCTACATTTTGTTTAGAGCACGAAGAAATTTCGGTACGAATTGTAATGACAAAGCGTTAAACCAATCAAGAGTGATGCTACTTAGTAGGAAAGTTTTGATGCACCAAATGCACAAATGCCCACGTGGATG
>Glyma19g39080.1 sequence type=CDS gene model=Glyma19g39080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCCGAAACCGATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATCCTCTGCATTCTGGGTTTCTACGCTCTGCATTTGCCTCACTCTTCCACACCTTCCTTCACTTCCAAAAGCCTTTCTCAATTGGAAAAACTTTTTCTTTCCACTTCCTCAAACTCTACCATTTCTTCCTACCTCCGCGCTCTTACCCTGCACCCTCACCTCGCCGGAACAAAACCCGCTTCAGACACAACCCGCCACGTTCTCAACCACTTCACTTCATTGGGCCTACAGGCCCATACAACAACGTACACCACTCTCCTTTCCTTCCCCGTGCGCTCTTCCCTCTCGGCGCACTTTAGCGATGGCGCTTCGGTAAGCCTGCGGCTCACCGAAGCGTCGGGGCCGGGGGTGGTGGCGGCGTACCACGCGTACTCGCCGTCGGGCAAGGTGCACGCGCGGGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCTCGCGCTGGCGGCGATGGGAGTGAACGTGAGCGGCTGCGTGGTGGTGGTGCGTAAGGGCGGAAGGATGGGGCGGGGCGCGGTGGTGGAGAGGGCGGAGGCGAACGGCGCGGCGGCGGTGCTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGACATGTGATGAGAGGGGGGATAGGGGACCCACTTACTCCAGGGTGGGCTGGGGTTGAGGGTGGTGAGACACTGGGGTTGGAAGATGGTGAGGTTTTGAAGAGGTTTCCTAAAATTCCATCTATGCCCTTGTCAGCTGAGGTGGCTGATATTATTTTGTCCTCTCTTGGGGGAGTTCCTCTGCCCCTTCAATGGAGGGGTACCCTTAAGTCTATGGTCAGGAATGTTGGTCCTGGCCCCACCATTCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCCGTCATAAAGGGATCGGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTCGATATTGCTCGTCGATTTTCTGCTCTATTGGGCTTGGGTTGGAAGCCGAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGACTCTGAGGGGGTATCATTATATGAAAATTGGGCTGCTGCTGCTGGTGGAGGCAATAATATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAGATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGTTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACACCCATTAACCCTTTCAATTGAAGAATTTGCTTCTGCTGCCAAAGAAGCCAATGATGAATTAAAGAAACTGAGATTGCAAGAAAGTGAAAGTTGCTTTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTCGTGTTTGGGCCTTCAAGCAACCATGAAAAGTTGAATTTCTTCCCAGGGATTTCTGATTCTATCACTAGATTGTCGGGTATAAGTGAAAGAGAAAGGCTATCATCAATCCAACACGAGATTTGGAGGGTTGCCAGAGCCATTCGTAGAGCTGCTTCTGCACTCAGTGGAGAATTCACCTAA >Glyma19g39080.2 sequence type=CDS gene model=Glyma19g39080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCCGAAACCGATGAACGTTTTGACAACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATCCTCTGCATTCTGGGTTTCTACGCTCTGCATTTGCCTCACTCTTCCACACCTTCCTTCACTTCCAAAAGCCTTTCTCAATTGGAAAAACTTTTTCTTTCCACTTCCTCAAACTCTACCATTTCTTCCTACCTCCGCGCTCTTACCCTGCACCCTCACCTCGCCGGAACAAAACCCGCTTCAGACACAACCCGCCACGTTCTCAACCACTTCACTTCATTGGGCCTACAGGCCCATACAACAACGTACACCACTCTCCTTTCCTTCCCCGTGCGCTCTTCCCTCTCGGCGCACTTTAGCGATGGCGCTTCGGTAAGCCTGCGGCTCACCGAAGCGTCGGGGCCGGGGGTGGTGGCGGCGTACCACGCGTACTCGCCGTCGGGCAAGGTGCACGCGCGGGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCTCGCGCTGGCGGCGATGGGAGTGAACGTGAGCGGCTGCGTGGTGGTGGTGCGTAAGGGCGGAAGGATGGGGCGGGGCGCGGTGGTGGAGAGGGCGGAGGCGAACGGCGCGGCGGCGGTGCTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGACATGTGATGAGAGGGGGGATAGGGGACCCACTTACTCCAGGGTGGGCTGGGGTTGAGGGTGGTGAGACACTGGGGTTGGAAGATGGTGAGGTTTTGAAGAGGTTTCCTAAAATTCCATCTATGCCCTTGTCAGCTGAGGTGGCTGATATTATTTTGTCCTCTCTTGGGGGAGTTCCTCTGCCCCTTCAATGGAGGGGTACCCTTAAGTCTATGGTCAGGAATGTTGGTCCTGGCCCCACCATTCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCCGTCATAAAGGGATCGGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTCGATATTGCTCGTCGATTTTCTGCTCTATTGGGCTTGGGTTGGAAGCCGAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGACTCTGAGGGGGTATCATTATATGAAAATTGGGCTGCTGCTGCTGGTGGAGGCAATAATATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAGATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTGTACAAAAACACGTTGAGCAACTTGATAGACCAGAAAATTTCTCTACACCCATTAACCCTTTCAATTGA
>Glyma19g39080.1 sequence type=predicted peptide gene model=Glyma19g39080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMPKPMNVLTTKPSPLSTMVVLLILCILGFYALHLPHSSTPSFTSKSLSQLEKLFLSTSSNSTISSYLRALTLHPHLAGTKPASDTTRHVLNHFTSLGLQAHTTTYTTLLSFPVRSSLSAHFSDGASVSLRLTEASGPGVVAAYHAYSPSGKVHARAVFANYGRERDYLALAAMGVNVSGCVVVVRKGGRMGRGAVVERAEANGAAAVLVYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDGEVLKRFPKIPSMPLSAEVADIILSSLGGVPLPLQWRGTLKSMVRNVGPGPTILNFTYQGEKKVATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSALLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWAAAAGGGNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVTGVWGLLALHLADDPVLPFNYVPYANELQLYKNTLSNLIDQKISLHPLTLSIEEFASAAKEANDELKKLRLQESESCFVDMKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVFGPSSNHEKLNFFPGISDSITRLSGISERERLSSIQHEIWRVARAIRRAASALSGEFT* >Glyma19g39080.2 sequence type=predicted peptide gene model=Glyma19g39080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMPKPMNVLTTKPSPLSTMVVLLILCILGFYALHLPHSSTPSFTSKSLSQLEKLFLSTSSNSTISSYLRALTLHPHLAGTKPASDTTRHVLNHFTSLGLQAHTTTYTTLLSFPVRSSLSAHFSDGASVSLRLTEASGPGVVAAYHAYSPSGKVHARAVFANYGRERDYLALAAMGVNVSGCVVVVRKGGRMGRGAVVERAEANGAAAVLVYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDGEVLKRFPKIPSMPLSAEVADIILSSLGGVPLPLQWRGTLKSMVRNVGPGPTILNFTYQGEKKVATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSALLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWAAAAGGGNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVVQKHVEQLDRPENFSTPINPFN*
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