SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g39040): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g39040): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g39040

Feature Type:gene_model
Chromosome:Gm19
Start:45863030
stop:45866745
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38920AT Annotation by Michelle Graham. TAIR10: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related | chr2:16248420-16250585 REVERSE LENGTH=335 SoyBaseE_val: 2.00E-144ISS
GO:0006817GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate ion transport SoyBaseN/AISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23041Panther RING FINGER PROTEIN 4 JGI ISS
PTHR23041:SF6Panther PUTATIVE RING FINGER PROTEIN JGI ISS
PF03105PFAM SPX domain JGI ISS
UniRef100_Q8GW10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable E3 ubiquitin-protein ligase BAH1-like n=1 Tax=Arabidopsis thaliana RepID=BAH1L_ARATH SoyBaseE_val: 9.00E-142ISS
UniRef100_UPI0001E23B97UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001E23B97 related cluster n=1 Tax=unknown RepID=UPI0001E23B97 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g39040 not represented in the dataset

Glyma19g39040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g203000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g39040.4   sequence type=transcript   gene model=Glyma19g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACGAGGTCCTTATTTTTATGCCTTTTTTTCCTACATGCATGCTCTTGTGTTCATGGGACCAAAGCGGGGATTGGCTCCTAGTTGGGGTTGTGGAAGAACTAATGTCTTAGACCATTAGGTTAAGTAATCAAAAGTAAGAGTAAGGGGTTATGGTGCATGTTTGGGAATGTGGGTGGATCACGTTGAGAAAACCATGGTGCCTTTTAAGTTATTCTCTGTCGTGGTGGAAAAAACATGTTGGGATACCGTGGTTTCCTTGAATCATCACAAAACCAAACACGCAATTATTAATGATGTAGATTGCAGAAAGTTCATTTGTTGATTTTTGTTTTTGAAAAGAAAGAAGGAAGTGGGTGTTTCTTGAAGGTCCAATAACAAGCAAGAGGTTATTTGGGGGAGAGGGTTAATGCTGTGAATGGTGATTAGAAGTGTGTGATCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTAGTAGGATACTTTAGTTCAAGAGTTAAGAATCTCCTTCATCTTCATATTGCAACAGGAATGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAGATGATAGGCAAGCCCTTACCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGAGAGAATTTCAAATCTAGGATGCATGCCGAACACATTGAAATTTTGCACTCACCTTGGCTAATTGAGTTGGGTGCTTTTTATCTGAATTCTAGTGGACTGGATAGTTGTGACCTTGATGGAGTCTATGGTCGCTTTTCATGTGAGCTAAACATAACTAAAGCTGTAATGACATTGGTTCTTCCCGATTCTATTAATCTCGAGCATGATCTTACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCAAGTCCTGAGTCAAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCTAAGGCCGTGCATATGTTAGAACTTGATCTGCTTGTGAAAAGAAGGTGCAAAGACTACTGGAAAGAGAGGCTAGCTGGTGAACGGGGTGATAAGTTGAAGCAATCCAATGACTACTGGAATTTACAGTCCACATATTCAATTGGATTGATGTAGGCTTTTATACTTTGGCCATCGAATCATCCGAGTAGTAGTGTTGTTAACAAATAGAAACCCCAGGAAAAGCATAACATGATTTTGAGTTTGTCCTTTGGCCTTGACTGAACTGTTGTAAGTGAGGTAGGATTTAATTAGTTCTTAAGACCTTAGCATGAAGAGGAAAATAGCAAATAAAAACGAGCACTTTGGAAAGTGGCATCCTCAACCGTCACTTTTTCAAAATTTTAAGGCAGAGCCGGTGATAGTCTAGTCATATTATTTTTTATGTCAAAGGAAGTTATCAAATAAATGTTGTTATATTTAAACGTTAAATTTTATGTGAACATTTCTTAGAGTTTATCAATGTATGGATTTGTTAAGTTTGTTTAGAAATTAA

>Glyma19g39040.2   sequence type=CDS   gene model=Glyma19g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCGGGTCTGCATTCAGAGAATATCTGCAGGAGGAACGGGAGTGGCTCGTGGACCAGAAATGTGCCCACGTTGAATATATAAGGTTAAAGAAAGTGTTGAAGACTTGCCAGAAAGATACCTCTTCTTCTGATAACAAGGACCAGTTATGTCACTGTCAGTCTTGCCCATTGTGTGATCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTAGTAGGATACTTTAGTTCAAGAGTTAAGAATCTCCTTCATCTTCATATTGCAACAGGAATGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAGATGATAGGCAAGCCCTTACCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGAGAGAATTTCAAATCTAGGATGCATGCCGAACACATTGAAATTTTGCACTCACCTTGGCTAATTGAGTTGGGTGCTTTTTATCTGAATTCTAGTGGACTGGATAGTTGTGACCTTGATGGAGTCTATGGTCGCTTTTCATGTGAGCTAAACATAACTAAAGCTGTAATGACATTGGTTCTTCCCGATTCTATTAATCTCGAGCATGATCTTACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCAAGTCCTGAGTCAAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCTAAGGCCGTGCATATGTTAGAACTTGATCTGCTTGTGAAAAGAAGGTGCAAAGACTACTGGAAAGAGAGGCTAGCTGGTGAACGGGGTGATAAGTTGAAGCAATCCAATGACTACTGGAATTTACAGTCCACATATTCAATTGGATTGATGTAG

>Glyma19g39040.4   sequence type=CDS   gene model=Glyma19g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGCATCAGATGTAGTAGGATACTTTAGTTCAAGAGTTAAGAATCTCCTTCATCTTCATATTGCAACAGGAATGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAGATGATAGGCAAGCCCTTACCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGAGAGAATTTCAAATCTAGGATGCATGCCGAACACATTGAAATTTTGCACTCACCTTGGCTAATTGAGTTGGGTGCTTTTTATCTGAATTCTAGTGGACTGGATAGTTGTGACCTTGATGGAGTCTATGGTCGCTTTTCATGTGAGCTAAACATAACTAAAGCTGTAATGACATTGGTTCTTCCCGATTCTATTAATCTCGAGCATGATCTTACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCAAGTCCTGAGTCAAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCTAAGGCCGTGCATATGTTAGAACTTGATCTGCTTGTGAAAAGAAGGTGCAAAGACTACTGGAAAGAGAGGCTAGCTGGTGAACGGGGTGATAAGTTGAAGCAATCCAATGACTACTGGAATTTACAGTCCACATATTCAATTGGATTGATGTAG

>Glyma19g39040.2   sequence type=predicted peptide   gene model=Glyma19g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGSAFREYLQEEREWLVDQKCAHVEYIRLKKVLKTCQKDTSSSDNKDQLCHCQSCPLCDQQFFSELMKEASDVVGYFSSRVKNLLHLHIATGMQRYVLRLRQCFKDDRQALTQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIEILHSPWLIELGAFYLNSSGLDSCDLDGVYGRFSCELNITKAVMTLVLPDSINLEHDLTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGVYSKAVHMLELDLLVKRRCKDYWKERLAGERGDKLKQSNDYWNLQSTYSIGLM*

>Glyma19g39040.4   sequence type=predicted peptide   gene model=Glyma19g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEASDVVGYFSSRVKNLLHLHIATGMQRYVLRLRQCFKDDRQALTQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIEILHSPWLIELGAFYLNSSGLDSCDLDGVYGRFSCELNITKAVMTLVLPDSINLEHDLTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGVYSKAVHMLELDLLVKRRCKDYWKERLAGERGDKLKQSNDYWNLQSTYSIGLM*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo