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Report for Sequence Feature Glyma19g39010

Feature Type:gene_model
Chromosome:Gm19
Start:45823597
stop:45826580
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g39010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06550AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:200 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0007166GO-bp Annotation by Michelle Graham. GO Biological Process: cell surface receptor signaling pathway SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2130 KOG Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain JGI ISS
PTHR12480Panther PHOSPHATIDYLSERINE RECEPTOR JGI ISS
PTHR12480:SF5Panther gb def: Hypothetical protein JGI ISS
PF00646PFAM F-box domain JGI ISS
PF02373PFAM JmjC domain JGI ISS
UniRef100_B9SDN5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SDN5_RICCO SoyBaseE_val: 0ISS
UniRef100_I1NAX4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAX4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g39010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39010
ParalogEvidenceComments
Glyma03g36360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g202600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g39010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g39010
>Glyma19g39010.1   sequence type=CDS   gene model=Glyma19g39010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGAGCTTCAGGATGAGAAACTTGTTGTCCCGTGTCAAAAAGAAAACCATCAAAAACAGAAACAGAAGTTGCATTTCCATTACAAAAGAGTTAGCACATCTAGTGGAACAAGAAGAAGAAGAAGAAGAAGTTAATGAAGAAGGTTTCAACATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTGGGGAATCTCTATCTGAACACAAGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCACACCCTTTCGGATGAGCTTGTTCTCGACATTCTCGGGTTTTTGGATTCTACTTCCTTAGGGGTTTTAGCCTCTGTGAGCAAGTCTTTCTATGTGTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCTCGGTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCATTTGATAACTTCGCTGTTGCTCTTGGGGGTTTCAAAGTTAGAGACTTTTACTCGGATTATCTCTTCCAGAGTTGGCTCTGTGCTAACCTCGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGAGGAATTTCGGTCGAGGAGTTTGTGTTGAATTTTGAAGAGCCTAATAAGCCGGTGCTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCTGAGAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCGGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCTGCTGGGTCTGGATCTTCCTTCCATGTTGATCCGAATTCAACTTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGCGTTCATCCTAGTCCTGATGGTGCGGATGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGCGCCACCAAAAATTGGAACAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAATCTGGAGGAATCTATAGCCATAACCCAAAACTATGTCAGTAGGAGAAATTTGATAAATGTATTGGATTTTTTGAAAAGTCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGACTGAATTTGTACGATAAGTTTAAGAATGCTATCGAGGCTTATTTTCCTGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTCGCGGATACTAATGCGGGAGCTTTCAAGTTCTCTTTCTAG
Predicted protein sequences of Glyma19g39010
>Glyma19g39010.1   sequence type=predicted peptide   gene model=Glyma19g39010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSFRMRNLLSRVKKKTIKNRNRSCISITKELAHLVEQEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNTSSTNSRDTGLGNLHTLSDELVLDILGFLDSTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFQYKGSWKSTYVSACYPSFDNFAVALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALRNWDRDYLVRLCGDVKFSVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWNKKPIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLINVLDFLKSPNASTLVSGTRDRLNLYDKFKNAIEAYFPGEIDELTRKEEERKIQQRKLSFWDSVADTNAGAFKFSF*






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