Glyma19g39000 - SoyBase

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Report for Sequence Feature Glyma19g39000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45821364
stop:	45823232
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g39000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06540	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:1999181-2001049 REVERSE LENGTH=622	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF47	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7LZR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZR6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1NAX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAX3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g39000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g39000

Paralog	Evidence	Comments
Glyma03g36350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g39000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g202500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g39000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g39000

Limit To All Plant Sequences

>Glyma19g39000.1   sequence type=CDS   gene model=Glyma19g39000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATCACCAGTGGTAGCAACTCAATCCTGAAAACGCTGAGGTTGAAGAATCCCAAGCTTGTACTGTTAGAGTGTTGTTCCAATGCTAGGGACCTCAAAATCATCCATGCCCACATGCTAAGAACCCACCTTTTCTTCGACGTGTTTGCAGCCAGTCGCCTCATTGCTTTCTGCATAGACTCAACCACCAACTTGCTGCATTACGCCATAAGGGTCGCGTCCCAAATCCAAAATCCCAATCTCTTCATCTACAATGCACTCATACGTGGGTGTTCCACAAGTGAAAACCCTGAAAACTCCTTTCACTATTATATCAAAGCTCTACGCTTTGGTCTATTACCTGATAATATCACCCACCCTTTTTTGGTTAAGGCATGTGCCCAGCTTGAGAATGCACCTATGGGCATGCAAACACATGGACAAGCCATTAAGCATGGATTTGAACAAGATTTTTACGTTCAAAACTCTCTTGTTCATATGTATGCCTCTGTTGGGGACATAAATGCTGCGAGGAGTGTTTTTCAGAGGATGTGTCGGTTTGATGTGGTGTCATGGACTTGCATGATTGCGGGGTATCACCGATGTGGGGATGCTAAATCTGCACGTGAACTGTTTGATAGAATGCCGGAGAGGAATTTGGTGACGTGGAGCACGATGATTAGCGGTTATGCCCGGAACAATTGTTTTGAGAAAGCGGTTGAGACGTTTGAGGCTCTTCAGGCAGAAGGGGTGGTTGCTAATGAGACTGTGATGGTGGGAGTGATATCTTCTTGTGCTCATTTGGGGGCTCTTGCAATGGGGGAGAAAGCTCACGAGTATGTGATGAGGAATAAGTTGAGTTTGAATCTGATTCTTGGGACAGCTGTGGTTGATATGTATGCAAGATGTGGGAATGTTGAGAAAGCTGTTATGGTTTTTGAGCAACTGCCAGAAAAAGATGTCCTTTGTTGGACAGCTTTGATTGCTGGATTGGCCATGCATGGTTATGCAGAGAAAGCACTTTGGTATTTTTCAGAAATGGCAAAAAAGGGGTTTGTTCCTAGAGACATTACGTTTACTGCAGTGTTGACAGCTTGCAGCCATGCAGGAATGGTTGAAAGGGGTTTGGAAATATTCGAAAGCATGAAACGTGATCATGGGGTGGAGCCGAGACTGGAGCACTATGGATGTATGGTTGATCTTCTTGGTCGTGCAGGAAAGTTGAGAAAGGCGGAGAAGTTTGTTCTTAAAATGCCTGTGAAGCCAAATGCTCCAATATGGAGAGCATTGCTAGGAGCTTGCAGGATTCACAAGAATGTGGAAGTTGGGGAAAGGGTGGGGAAGATTTTGTTAGAGATGCAACCAGAATATAGTGGTCATTATGTGCTACTCTCCAACATATATGCTCGTGCAAATAAGTGGAAAGATGTTACTGTCATGAGGCAAATGATGAAGGACAAAGGAGTAAGAAAACCACCTGGGTATAGTCTCATTGAGATAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAAACACACCCGGAAATAGAGAAAATAGAAAGAATATGGGAAGATATAATACTCCCAAAAATAAAACTAGCTGGCTATGTTGGAAATACAGCTGAGACAATGTTTGACATTGATGAAGAGGAAAAGGAAGGTGCCCTTCACAGGCATAGTGAGAAGCTGGCCATTGCATATGGAATTATGAAGATTCGGGCTCCTACACCAATTCGGATTGTTAAAAATTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTGATTTCAAAGGTTTTCGAAGTGGAGTTGATTGTGAGAGATCGAAACCGATTCCATCATTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA

Predicted protein sequences of Glyma19g39000

Limit To All Plant Sequences

>Glyma19g39000.1   sequence type=predicted peptide   gene model=Glyma19g39000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSITSGSNSILKTLRLKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW*

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