Report for Sequence Feature Glyma19g38940
Feature Type: gene_model
Chromosome: Gm19
Start: 45779052
stop: 45780612
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38940
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G11690 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3695484-3696242 FORWARD LENGTH=252
SoyBase E_val: 2.00E-19 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q43713 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pollen preferential protein n=1 Tax=Lilium longiflorum RepID=Q43713_LILLO
SoyBase E_val: 1.00E-11 ISS
UniRef100_UPI000233E302 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E302 related cluster n=1 Tax=unknown RepID=UPI000233E302
SoyBase E_val: 3.00E-142 ISS
Expression Patterns of Glyma19g38940
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g38940
Paralog Evidence Comments
Glyma03g36280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38940 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g201900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38940
Coding sequences of Glyma19g38940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38940.2 sequence type=CDS gene model=Glyma19g38940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAACAGGATAATTCTCCGGCAGGCGGGTGGGTCGACGAACCGGCGGCAGCCGCTGCTGCTGCAGCGGCGTCCCTCGAAGATGGCGACGCGCGTGGGGGAGGTGGTGGGCGGCACGGCGGCGGAGTGCGTGGCGGTGTGCTGCTGCTTCCCCTGCGGCGTGGCGAACTTCCTCCTCCTGGCAATCTACAAGGTCCCTGCGGGGCTGTACCGGCGAGTGCTGAAAAAACGGCGGCACCAGAAGATGCTGAAGGAAGGGCTGCGGAAGCCCACGCGCCGCCACTGCTCGTGCGGGTGCTGCGACGACGTTAGCGGCTCCAGAATATACCCCATGTGCGCCAACGACGCCGTTGACATCAAACGGCTACGTTCGACGACGACGGAGCTTGATAACAACGATGACGCCACGCGCGCGCTCGAGAAGGAGATGTGGGACCAGTTTTACGGCACTGGGTTTTGGAGAAGCTCTTCTAACAGAGAAGTCAGAGAAGAAGAAGTAAAACCCTCCCAAACGCTCCCTTCTTCAAATATTAATGTTCTTGTTCCCAATCCTCAGCCTCAGCTTTTTGCTTCAAGTTCAAGTTGA
Predicted protein sequences of Glyma19g38940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38940.2 sequence type=predicted peptide gene model=Glyma19g38940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNRIILRQAGGSTNRRQPLLLQRRPSKMATRVGEVVGGTAAECVAVCCCFPCGVANFLLLAIYKVPAGLYRRVLKKRRHQKMLKEGLRKPTRRHCSCGCCDDVSGSRIYPMCANDAVDIKRLRSTTTELDNNDDATRALEKEMWDQFYGTGFWRSSSNREVREEEVKPSQTLPSSNINVLVPNPQPQLFASSSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
