Glyma19g38910 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g38910

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45759666
stop:	45762740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35860	AT	Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 16 precursor \| chr2:15059859-15061810 FORWARD LENGTH=445	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
KOG1437	KOG	Fasciclin and related adhesion glycoproteins	JGI		ISS
PTHR10900	Panther	TRANSFORMING GROWTH FACTOR	JGI		ISS
PTHR10900:SF38	Panther	FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN)	JGI		ISS
PF02469	PFAM	Fasciclin domain	JGI		ISS
UniRef100_A9XTL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein 14 n=1 Tax=Gossypium hirsutum RepID=A9XTL9_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1NAW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38910

Paralog	Evidence	Comments
Glyma03g36260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g201600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38910

Limit To All Plant Sequences

>Glyma19g38910.1   sequence type=CDS   gene model=Glyma19g38910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCACACAGACACTTCCTCACCCTCTTCCTTCTTTTCCTTCTGCCACTCCATTCTCACTCTGCATTCTCTCATAACTCTTCTTCCTCGTCTCAAATTAACTCTAATTCCATCCTTGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCTGAGCTTGTTGAGAAAGCGCTTCTTCTCCAGAAGCTAGAAGAAGCCGTCGGCAACCACAACATCACCATCTTCGCGCCGCGAAACCAAGCCCTGGAACGCGACCTAGACCCTGAATTTAAGCGATTCCTTCTCGAGCCTCGCAATCTTAGGTCGCTTCAGACGCTCTTGATGTCTCACATTCTCCCGACGCGAATCGCCTCTCACCACTGGCCCTCCGACGACCTCCGCCACCGCACTCTCTCCGATCACCGCCTGCATTTGGCCTCCAAGCCCTCCGGCCATAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGCATCGAGCGTCTCATCGTCCCCCGATCCGTACAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTTCCCGAGGGAGCGCCGGAGGTCGATCCCCGTACTCACCGCCTCAAGAAGCCCGCTCCCGTTCCCGCCGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCATGGCACCAGGCCCATCCCTCGCGCCGGCGCCGGCGCCGGGACCGGGAGGCCCGAAGCACCACTTCAACGGCGAGCGCCAGGTCAAGGACTTCATCCACACACTCTTACATTACGGAGGTTACAACGAAATGGCTGATATTCTCGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCAGAAGGTTACGTTCTCACCGTTTTGGCTCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCTGGCGCACCGGAACAGATAATGTATTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATACGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTGCGGTTACCGCACAAGGTTCTGGCTCAAGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCCTACCTGTTTGATCCTGATATTTACACTGATGGTAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCTGAAGAAGAAGAAGAACGCACTCGCCGCACCACTCCACTTGTTAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGATGGAAATCGCTTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA

Predicted protein sequences of Glyma19g38910

Limit To All Plant Sequences

>Glyma19g38910.1   sequence type=predicted peptide   gene model=Glyma19g38910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTMDSSSIYGVSHRHFLTLFLLFLLPLHSHSAFSHNSSSSSQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPSDDLRHRTLSDHRLHLASKPSGHRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNTVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTRRTTPLVKVAAPKPRRGKLMEIACSMFGSFGQVCQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain