Glyma19g38900 - SoyBase

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Report for Sequence Feature Glyma19g38900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45748727
stop:	45753437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35880	AT	Annotation by Michelle Graham. TAIR10: TPX2 (targeting protein for Xklp2) protein family \| chr2:15063204-15065259 REVERSE LENGTH=432	SoyBase	E_val: 3.00E-52	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06886	PFAM	Targeting protein for Xklp2 (TPX2)	JGI		ISS
UniRef100_G7I707	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed specific protein Bn15D14A n=1 Tax=Medicago truncatula RepID=G7I707_MEDTR	SoyBase	E_val: 3.00E-39	ISS
UniRef100_UPI00023372AA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023372AA related cluster n=1 Tax=unknown RepID=UPI00023372AA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38900

Paralog	Evidence	Comments
Glyma03g36250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g201500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38900

Limit To All Plant Sequences

>Glyma19g38900.2   sequence type=CDS   gene model=Glyma19g38900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGAAAACGGGGTTGCTGTGGAGGAAGAGAAACGTGTTATTGGGGTAACAACCAAGGTGGAGAATGTAAAGAAAGAAGTTGAAAATGACTGCAATGGTGCAGAAATTATGACCAAGAATGAAGTATCTAAACCCACAGTAGTGGCTAAACGCCCCATTTCTGCTGGTGACAAAGTTGCAGTTGAAGCCTCCAAAACTTATGCAAATAAAAATTCAAAAGGTGCTACTACTAAGGAAACTGTTGGTAGAGCAAGTGTTGCTTCCAAGAACAACAAATATGCCAAAGATAAACCCATTTTGAAGGGTCCAAGTTCAATATCTCAAAAACAAAGGCCATCCCTTTCCCAAAGCCTTTCTTTCCCAGCCAAATCAGCTGGTGAAGATGCCATGCAGAAAAGCATTGATGGATATCTTGTGAAGCCTAAAGTTAGAAATAATCAAGGTAATGGGATTAGAGGTGAGGCCCCCATTCGTCATTTAAACAAGTCCACAAACTCTGAAGTCAACTCACTGGCAAAAACCAACACTGGCATGCCTGGTTTGAAACGCTCTGCGTTTGGAAGGTCCACTACAGTTGCTGCATTCACCAAGAGCCAAACTTCTGAGGCATCGTTACCCGTTGACCAGGTGTCAAACACAGCAAAAACTGCAAAAGCAGATAAAGAGAATGATGATTCTCATTCCACAACTTCAAGTGCTACTCCTTGTCTGAGAAGCAGTGGAAGTGGATTTTCCTTTAGATTGGAAGAAAGAGCTGAAAAGCGGAAGGAGTTTTTCTCAAAGTTGGAGGAAAAAATTCTAGCCAAGGAAGCAGAGAAAACCAACCTACAAGCTAAATCAAAGGAAAACCAAGAGGCAGAGATCAGGCTATTGAGGAAGAGTATGGCATTCAAAGCAACTCCAATGCCAAGTTTCTATAAGGAACCACCTCCCAAAGTTGAGCTGAAGAAGATACCAACAACACGCGCAAAATCCCCAAAGCTTGGAAGGCACAAAGAATCTGCTATGAACAACAATTCAGGAGAAGACAAGACTTGCTCCATTCCACGTGGGAAACAACAGCAGAATGATTCAAACAAGGTTAAGGGTCATAAAGATATGGTTTCAAAGAAACCAATCCGGAAAACCCAAGCCAAGGTGAAGTCTCAGGAAAATGTAACGCCAGAAAACAAAGAACAATGCCAAGATACACATGTTAACAATTCTGAATGCAAAAATGACATGGAGTTACAATCTGAAACAGGTCATGCACCAAATAGTACACTGCTTCTAAATTCAACTACACCTGAGCTTTTGTCATATGAGGTTACTGTTGGAGTGTAG

Predicted protein sequences of Glyma19g38900

Limit To All Plant Sequences

>Glyma19g38900.2   sequence type=predicted peptide   gene model=Glyma19g38900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESENGVAVEEEKRVIGVTTKVENVKKEVENDCNGAEIMTKNEVSKPTVVAKRPISAGDKVAVEASKTYANKNSKGATTKETVGRASVASKNNKYAKDKPILKGPSSISQKQRPSLSQSLSFPAKSAGEDAMQKSIDGYLVKPKVRNNQGNGIRGEAPIRHLNKSTNSEVNSLAKTNTGMPGLKRSAFGRSTTVAAFTKSQTSEASLPVDQVSNTAKTAKADKENDDSHSTTSSATPCLRSSGSGFSFRLEERAEKRKEFFSKLEEKILAKEAEKTNLQAKSKENQEAEIRLLRKSMAFKATPMPSFYKEPPPKVELKKIPTTRAKSPKLGRHKESAMNNNSGEDKTCSIPRGKQQQNDSNKVKGHKDMVSKKPIRKTQAKVKSQENVTPENKEQCQDTHVNNSECKNDMELQSETGHAPNSTLLLNSTTPELLSYEVTVGV*

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