Glyma19g38890 - SoyBase

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Report for Sequence Feature Glyma19g38890

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45738315
stop:	45742815
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04870	AT	Annotation by Michelle Graham. TAIR10: calcium dependent protein kinase 1 \| chr5:1417015-1419877 REVERSE LENGTH=610	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI		ISS
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI		ISS
PTHR24349:SF13	Panther		JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9SDM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SDM2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E2FF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2FF related cluster n=1 Tax=unknown RepID=UPI000233E2FF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38890

Paralog	Evidence	Comments
Glyma03g36240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g201400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g38890

Limit To All Plant Sequences

>Glyma19g38890.2   sequence type=transcript   gene model=Glyma19g38890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATCATTCATTCCCCTCACTCATCATGAAAGAATAATTTCCATTTTTTTAATTGCTTACAAGAGATTGCACACGATCTTTTCCATCTATATAACATCAACACTTTCTCTTATCCTTTTCCTTATTCAACGCGAACAATTCCCACTCGGACTCTGTCTCACACCTTCTAGTTTACAACTTTCACTCCTTTGAAAACTTCCACTTTTACGCCTTCAAAATTATCCTTTTACACCTCTTTTCCTCGTCCATTTTCGTTTCCATAAAGGGTTTCATTCATTAATTCGAATCATTCTACTTCTTCTTCAAATCTCCACTGATTTTCCCTTCAATGTTCATATGCTCGCTTTAGGCTATAGTGGGTTTGGTGCAGAAATTCGAATCTGATTTCGGGGCTTCACCTGCTTCTTGTTTCTTATATGCAAAAACAGTGACAAGTGCATGATGGGAAACAATTGTCTCGGATCGAAAACCTCAAATGATGCACTATTTCCCTATGTTCTTCCGAGTTCATTCTGGTGGCTTCATCAAACAAGTGTCAAAGAAATTTCTGATGCACCTTCAATTGTGAGTAGAATTCAAGACACACATTTTCTAGAGAATGTTCAAGAAAAGCCACCACTTGTAGTGAAAATTAACAATGAGGAGATGAAGCTGAAACCAGTTCCACTTCCAACCAATAAACACCAGAAAGAGACTAACATGTCTTCAGGGGAACAAATAAGGCAAATACAAAAAATGCCTCACAAAGTTAAGAGGCTACCAATAGGGCTTCAAGCCGAGTCAATTTTGAAGAGAAAAAATGGTAACTTTAAGGAGTACTATAACTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACAACATTCCTATGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGCTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATCAAAGGGTCTTATGAGGATGGTGTTGCAGTTTATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATAGTGGAAAAGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTCAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTGATCCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAATGAAGAGTCTACTCTTAAGGCCATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGACATTTTTAAGGACGTGGTTGGAAGTCCTTATTACATCGCACCTGAAGTTCTACGGAGGCATTATGGTCCAGAAGTTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTTAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATGACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTATTCTGTAATGAGCAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTTTGAACTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCATATTACTTTAGAAAAACTTAAGGCTGGATTGAAAATGCTTGGTGCTAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGCACAATTGACTACAGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGAAAGAGAAGATCATTTAGTTGCTGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATCTCTCAAGATGAGCTTCTAAAAGCTTGTAAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTCAGTCAAAACGGTTTAAAGGGTGACACTGATTTTAGTATTGGATTTAGGGAGGCACTATTAGTGTGTTGAGAAAAAGTGGAAACGTTTTTTATTCCTTTTCCTCAAGATATGGTGAAATTAATTGCTTTTGAGGAAAATTCATATCAAACTTTTGGGTTTCAACTTGGTGACCTCTAAATTCCATCCAGGCCAGCATTTAAGAGTGTTGAATGCATCATTATGGTTAGGACAATTCATATCAACAAGTTTAACATGAACTGATGATTCTTGATAATGGAGTTGGTAGAGGGAGTTTTTCAAGTAGTGTTTGTCATGCTTAACACTTAGGGTTAAAGGATTATAATGAGTTTGCCTAATGTCAAAAATATCACTATCTGAATTTTATTTCTGTCTCGCCTCCAAATGTTATAGATATGAATTATAATGTAAAACAACCTATATATAAAAGG

Coding sequences of Glyma19g38890

Limit To All Plant Sequences

>Glyma19g38890.1   sequence type=CDS   gene model=Glyma19g38890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAAACAATTGTCTCGGATCGAAAACCTCAAATGATGCACTATTTCCCTATGTTCTTCCGAGTTCATTCTGGTGGCTTCATCAAACAAGTGTCAAAGAAATTTCTGATGCACCTTCAATTGTGAGTAGAATTCAAGACACACATTTTCTAGAGAATGTTCAAGAAAAGCCACCACTTGTAGTGAAAATTAACAATGAGGAGATGAAGCTGAAACCAGTTCCACTTCCAACCAATAAACACCAGAAAGAGACTAACATGTCTTCAGGGGAACAAATAAGGCAAATACAAAAAATGCCTCACAAAGTTAAGAGGCTACCAATAGGGCTTCAAGCCGAGTCAATTTTGAAGAGAAAAAATGGTAACTTTAAGGAGTACTATAACTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACAACATTCCTATGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGCTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATCAAAGGGTCTTATGAGGATGGTGTTGCAGTTTATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATAGTGGAAAAGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTCAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTGATCCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAATGAAGAGTCTACTCTTAAGGCCATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGACATTTTTAAGGACGTGGTTGGAAGTCCTTATTACATCGCACCTGAAGTTCTACGGAGGCATTATGGTCCAGAAGTTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTTAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATGACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTATTCTGTAATGAGCAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTTTGAACTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCATATTACTTTAGAAAAACTTAAGGCTGGATTGAAAATGCTTGGTGCTAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGCACAATTGACTACAGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGAAAGAGAAGATCATTTAGTTGCTGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATCTCTCAAGATGAGCTTCTAAAAGCTTGTAAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATGTCAGTACATTTTATAGTAACGTAATTTAA

>Glyma19g38890.2   sequence type=CDS   gene model=Glyma19g38890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAAACAATTGTCTCGGATCGAAAACCTCAAATGATGCACTATTTCCCTATGTTCTTCCGAGTTCATTCTGGTGGCTTCATCAAACAAGTGTCAAAGAAATTTCTGATGCACCTTCAATTGTGAGTAGAATTCAAGACACACATTTTCTAGAGAATGTTCAAGAAAAGCCACCACTTGTAGTGAAAATTAACAATGAGGAGATGAAGCTGAAACCAGTTCCACTTCCAACCAATAAACACCAGAAAGAGACTAACATGTCTTCAGGGGAACAAATAAGGCAAATACAAAAAATGCCTCACAAAGTTAAGAGGCTACCAATAGGGCTTCAAGCCGAGTCAATTTTGAAGAGAAAAAATGGTAACTTTAAGGAGTACTATAACTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACAACATTCCTATGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGCTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATCAAAGGGTCTTATGAGGATGGTGTTGCAGTTTATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATAGTGGAAAAGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTCAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTGATCCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAATGAAGAGTCTACTCTTAAGGCCATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGACATTTTTAAGGACGTGGTTGGAAGTCCTTATTACATCGCACCTGAAGTTCTACGGAGGCATTATGGTCCAGAAGTTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTTAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATGACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTATTCTGTAATGAGCAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTTTGAACTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCATATTACTTTAGAAAAACTTAAGGCTGGATTGAAAATGCTTGGTGCTAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGCACAATTGACTACAGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGAAAGAGAAGATCATTTAGTTGCTGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATCTCTCAAGATGAGCTTCTAAAAGCTTGTAAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTCAGTCAAAACGGTTTAAAGGGTGACACTGATTTTAGTATTGGATTTAGGGAGGCACTATTAGTGTGTTGA

Predicted protein sequences of Glyma19g38890

Limit To All Plant Sequences

>Glyma19g38890.1   sequence type=predicted peptide   gene model=Glyma19g38890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGNNCLGSKTSNDALFPYVLPSSFWWLHQTSVKEISDAPSIVSRIQDTHFLENVQEKPPLVVKINNEEMKLKPVPLPTNKHQKETNMSSGEQIRQIQKMPHKVKRLPIGLQAESILKRKNGNFKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLAMDDDVEDVRREIEIMHHLEGCPNVISIKGSYEDGVAVYVVMELCGGGELFDRIVEKGHYTERKAAKLARTIVSVIEGCHSLGVIHRDLKPENFLFVDGNEESTLKAIDFGLSVFFKPGDIFKDVVGSPYYIAPEVLRRHYGPEVDVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFSSDPWLNISESAKDLVRKMLVRDPRKRMTAHEVLRHPWIQVDGVAPDKPLDSAVLSRLKQYSVMSKLKKMALRVIAENLSEEEIFELKVMFKMIDTDNSGHITLEKLKAGLKMLGANLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVEREDHLVAAFSFFDRSGSGYISQDELLKACKEFGMENVCLEEMIQEADQNNVSTFYSNVI*

>Glyma19g38890.2   sequence type=predicted peptide   gene model=Glyma19g38890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGNNCLGSKTSNDALFPYVLPSSFWWLHQTSVKEISDAPSIVSRIQDTHFLENVQEKPPLVVKINNEEMKLKPVPLPTNKHQKETNMSSGEQIRQIQKMPHKVKRLPIGLQAESILKRKNGNFKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLAMDDDVEDVRREIEIMHHLEGCPNVISIKGSYEDGVAVYVVMELCGGGELFDRIVEKGHYTERKAAKLARTIVSVIEGCHSLGVIHRDLKPENFLFVDGNEESTLKAIDFGLSVFFKPGDIFKDVVGSPYYIAPEVLRRHYGPEVDVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFSSDPWLNISESAKDLVRKMLVRDPRKRMTAHEVLRHPWIQVDGVAPDKPLDSAVLSRLKQYSVMSKLKKMALRVIAENLSEEEIFELKVMFKMIDTDNSGHITLEKLKAGLKMLGANLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVEREDHLVAAFSFFDRSGSGYISQDELLKACKEFGMENVCLEEMIQEADQNNDGRIDYNEFVAMMQRGNADFSQNGLKGDTDFSIGFREALLVC*

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