Glyma19g38880 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g38880

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45733314
stop:	45735670
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35900	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:15070203-15071540 REVERSE LENGTH=192	SoyBase	E_val: 1.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1NAW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAW2_SOYBN	SoyBase	E_val: 2.00E-95	ISS
UniRef100_Q6X182	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mal d 1-associated protein n=1 Tax=Malus x domestica RepID=Q6X182_MALDO	SoyBase	E_val: 3.00E-15	ISS

Expression Patterns of Glyma19g38880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38880

Paralog	Evidence	Comments
Glyma03g36230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g38880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38880

Limit To All Plant Sequences

>Glyma19g38880.1   sequence type=CDS   gene model=Glyma19g38880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGTGCAGAACAGAGGAGGTCGAATCTGGAAAGTTCGTCAGAAAGTGCGAGAAAACCGAAGAGATTCTCAGGAATTGCATCGGAAAGCCTGCTGAATGTTGCAATCAAACAAAGAGTATACTGAAGAGGATATCACAGATGAGGTACTTAAAGGAAGGTCTGTTCCATTTAGCTCATCTGACGGTGGTGTGTTTGATTTCCCTGGGCTACGAAATGATATTGAAAATGGGTTTTTTGATGTTTTTTCTAAGTCTCCAAGCATCTTTTGATGCAGAGTCATCCTCAGTGCCCTCTGTGAGGAGAGGGATACCTATTGAAGAATATCGTCGGCCAGAAACCTATCCTAAATCCAACGAAAATGAATCAGGAGATACTGATTTTGTTGCAATGGCTAAAGAT

Predicted protein sequences of Glyma19g38880

Limit To All Plant Sequences

>Glyma19g38880.1   sequence type=predicted peptide   gene model=Glyma19g38880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWCRTEEVESGKFVRKCEKTEEILRNCIGKPAECCNQTKSILKRISQMRYLKEGLFHLAHLTVVCLISLGYEMILKMGFLMFFLSLQASFDAESSSVPSVRRGIPIEEYRRPETYPKSNENESGDTDFVAMAKD

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain