Glyma19g38842 - SoyBase

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Report for Sequence Feature Glyma19g38842

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45705247
stop:	45713167
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38842

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22030	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 8 \| chr5:7290155-7296344 REVERSE LENGTH=913	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
KOG1870	KOG	Ubiquitin C-terminal hydrolase	JGI		ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF197	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
UniRef100_F6HAA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vitis vinifera RepID=F6HAA6_VITVI	SoyBase	E_val: 0	ISS
UniRef100_I1JQA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38842

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38842 not represented in the dataset	Glyma19g38842 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38842

Paralog	Evidence	Comments
Glyma03g36201	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38842 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g201100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38842

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38842

Limit To All Plant Sequences

>Glyma19g38842.1   sequence type=CDS   gene model=Glyma19g38842   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCGTTTATCCGAGAGACTGGTCCGTTTGCGTGGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCTATCTCCTTCATCTCTGCAAGTTCCTCGCTCGCTTCCTACTCTCCCAAATACTACCCGCCATGGACAACCTCTTCTCTGATTACTTCTCCGACGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCAAGACCAAGACCACCACCGCGACCGCGATTTCGCCGCCCTCGAGCGCCTCTACCTCCTCCCCTACACCTGGTGGCTGGAAGCGGAAAACGAAGGTGATCGAGGAGACGCAGTGCTTTATACGGTGTCATGCAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTCAGGAAGGAAGAGGAACCACACAACAACATTGGGGTTTCTGCCCGTCAGTATGCCTTGGTTCCCGAGGGACTTTGGTTGCGTGCTCTCAAGAGGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCATCCCATATGAAGAGGAAAGTTTGCCAGATTTGTTCCCTTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGATAAAGCTTGTGACATTTTCAATTCTACATATAACCCTGTGCACATTTGGGACTTTTCAGGACAGACAACCCAGTTCTTCTTGAATGACAAATCTAGATTGCCAAACGATTCTCCTGGTCAACTTGGAAAAGAGGTAGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTGTAGGGGGTAATGGGGGCAATGAAATGATTTTAGATAGGTCTCAGACGGAATGTTCACATAGTGGCTCTGTTATAATGAATGGAAGCACCGACAATGTGATCCCCTGCATATCAGCGACCAACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCAATCTTTGGGCTTAACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTAGCTCATACCCCAAAACTTGTTGATTTTTTCCTTGGAGATTACTGTAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCGCCCATTGCACCAAGAACGTTCAAGATGAAACTAGCTAATTTTGCTCCTCAATTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCAATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACGATACGGACCATGACTTTGACGGTCATAAGCACTGATGGGATAACATCGCCTTCCACAATTACGGTAACAGTGCCTGAAAGTGGAACACTTAAGGATCTTATTGGGGCATTAAGTACTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTCGAGGATCCATCTGATTTGTTAGTTGAAATTAGAGATCAGGACAAACTTGTCGCTTACCGAATGCAGAAGTGTAATGAGCCTAGTCCCTTGGTTGTTTTTTTGCATGAACGTTTGGCGGAAAATTTTGGGAAGGAGAGGTTTGAAAACAGGTTGTTTGGTATTCCGCTTGTTACAAGGTGGTCCAGTATTTCCTGTGGATATGATGATGTTCAAAAGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGATGTATTACATGAGTATGATAAGAATGATGGTGTTAATAAAAGAGTAAGTGAAGATGATGAATTGGGTGATGCTACTAACTCTGCAGCAATAGGAAATGATGCAGACTCAAACAGTGGAACAGAGGATGGCATTCATTCTTCAACTGCCTTTGAATTCTACTTACAAGGAATAGAGAGGGCGAAGATAATAGTGAAAAAACCATTACCACAAGTCACAACATTGCCTGGAAAGCTGCCTGTGGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATGATACATACCTGCTTGACTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTCACTGCAAAGAACCTCAGCAAGCATATAAGAAACTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGCTACTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTATCAACATATGTAGCCCACGGGAATAGCCAGTCTTCCAACCGCTATGTGTTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTGTTAGTGAGGACATGATAAAGACTCCTGCTGCCTATGTTCTTTTCTACAGGAAAATTTAG

Predicted protein sequences of Glyma19g38842

Limit To All Plant Sequences

>Glyma19g38842.1   sequence type=predicted peptide   gene model=Glyma19g38842   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRLSERLVRLRGLFPKPTRFLALVSLSYLLHLCKFLARFLLSQILPAMDNLFSDYFSDDFDSSPYRPHRRFLQDQDHHRDRDFAALERLYLLPYTWWLEAENEGDRGDAVLYTVSCNSDSDSEILLHLRKEEEPHNNIGVSARQYALVPEGLWLRALKRYNDFNNAVKDFGSIPYEEESLPDLFPLQVKIFVSWETSSLVAKISQKENVADFYDKACDIFNSTYNPVHIWDFSGQTTQFFLNDKSRLPNDSPGQLGKEVVLELQVHGLPDSVGGNGGNEMILDRSQTECSHSGSVIMNGSTDNVIPCISATNHFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYCKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITSPSTITVTVPESGTLKDLIGALSTSCSLRDDETLLVAEIYRNKIFRVFEDPSDLLVEIRDQDKLVAYRMQKCNEPSPLVVFLHERLAENFGKERFENRLFGIPLVTRWSSISCGYDDVQKEFLKLINPFLMRTEDVLHEYDKNDGVNKRVSEDDELGDATNSAAIGNDADSNSGTEDGIHSSTAFEFYLQGIERAKIIVKKPLPQVTTLPGKLPVVVVLWSDKMLKMYDTYLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPHCKEPQQAYKKLDLWRLPEILVVHLKRFSYSRYFKNKLETFVDFPINDLDLSTYVAHGNSQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVSEDMIKTPAAYVLFYRKI*

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