Report for Sequence Feature Glyma19g38830
Feature Type: gene_model
Chromosome: Gm19
Start: 45685766
stop: 45690115
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G11760 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1NAV7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAV7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SF22 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F26K24.5 protein n=2 Tax=Arabidopsis thaliana RepID=Q9SF22_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g38830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g38830
Paralog Evidence Comments
Glyma03g36191 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g201000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38830
Coding sequences of Glyma19g38830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38830.1 sequence type=CDS gene model=Glyma19g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGTGAAGATGATGAGGTGGCGGCCCTGGCCGCCTCTCCTCTCGAAGAAGTTCCAAGTGAGGCTGCACGTGCGGAGGCTCCAGGGCTGCGATCTGCTGCAGAACGCTGCACTCCAAGGTTCAAGATTGGTCCTTGAGATTCGCTGGAAGGGTCCTAAGTTGATCCTTGGCTCTCTGCGATGGAACTCCGTCGCCAGAAATTTTACTAAAGAGGCGGACTTTGAACTCGACGGCGGTGGCGCCGCCGTCGTTCACTGGGACGAGGAGTTTCAGACTATGTGCAATTTGAACGGTTACAGAGACAATGTCTTTCACCCTTGGGAGATCGCTTTCACTCTCTTTAATGGATTGAACCAGAGGCCAAAAAACAAGGTTCCTGCAATTGGAACCGCATTATTAAATATTGCTGAATTTGCATCTTCAACTGATCAAAAGGATTTTGATTTAAACATTCCACTCACACTAACCGGAGGTTCTGGGGAGCCTTCTCCTTTACTCTGTATATCAATAAGTTTGATGGAGCTAAGCGTAGCTCAAGAAAGCTTGGAGCCAGTTCAGAGATCTATAGTGCCTGTGCCATCGCCCTCTGCCAAGTCGGGAGAAACAGCCTTGGCAGAAAAAGATGAGCTTTCTGCAATTAAAGCTGGTCTTAGGAAAGTAATGATTTTGACGGAGTTTGTATCTCCCAAGAAAGCAAAAAAGGGTTGTCGTGAGGAAGAAGGCAGTGAAGGAAGGTGCTCTAGGAGTGAGGATGGTGAATACAATTATCCTTTGGATTCTGAGTCACTTGATGATTCTGAGGAAGGTGAAACAGATGGGGGGAAGGAGGATTCCAGTGTTAGGAAGTCATTCAGTTATGGAACACTGGCTTCTGCAAATGCTGGGGGATTTTTTCATTCCAATGCGAGAGTAAATTGTAATGATGAAGACTGGGTTTATTACAGCCATCGCAAGTCTGATGTTGGGTGTTCACAGAGGGAGGATTCTACTGCTTCTTCTTCTCAGCCTTATTTAGTACAAAGTTCCAAGCGCAGCATACTTCCATGGAGGAAGAGGAAGTTGAGTTTCAGATCTCCTAAAGCTTATAAGGGAGAGCCATTGTTAAAGAAGGTGTATGCAGAAGAAGGTGGTGATGACATAGACTTTGATCGCCGTCAACTTAGCTCTGATGAATCCCTTTCTTTGACTTGGTACAAGATTGAGGATGACACGTCTGCACATCGATCATCAATCTCTGATTTCGGGGATGACAGTTTTGCTGTAGGGAGTTGGGAGCAGAAAGAAGTCACGAGTCGTGATGGTCATATGAAGCTTCAGACACAGGTCTTCTTTGCTTCAATTGATCAACGCAGTGAACGTGCAGCAGGTGAGAGTGCATGTACAGCTCTTGTTGCTGTGATTGCTGACTGGTTCCAAAATAATTGTGATCTTATGCCCATAAAATCACAGTTAGATAGTCTAATTAGAGAAGGCTCCTCAGAATGGAGGAACTTATGTGAAAATGATGCCTACAGAGAGCGGTTCCCTGACAAGCATTTTGACCTGGAAACAGTCATTCAAGCAAAAATACGTCCGCTTACTGTGGCTCCTGGGAAGTCCTTTATTGGTTTTTTTCATCCTGAAGGGATGGATGAAGGCAGATTTGACTTTCTGCATGGTGCCATGTCTTTTGATAATATTTGGGATGAGATTAGTCGTGCTGGACAAGAGTGCCCCAGCAATGGTGAACCTCACATTTATATTGTTAGTTGGAATGATCATTTTTTCATCCTTAAAGTTGAATATGATTGTTATTACATCATTGACACTTTGGGAGAGAGACTTTATGAAGGGTGCAACCAGGCATATATCTTGAAATTTGACAGCAACACAATGATGTACAAAACGCCAAATGTTGCTCATTCATCAGACGACAAGACATCCAATGACCAGCAAACTGTAGCAGAAATATTAGATCCTAATAATAGTCAAACCCAACAAGTAAATAGCAAGGAGGTGGATTCTGTTGCAGGGGAAAAAGAACAGTTGAGGACTGAGCAAGAAGAACAAGTTATATGCAGAGGGAAGGAAGCATGCAAAGAGTACATTAAAAGCTTCCTAGCTGCAATCCCTATCAGAGAATTGGAAGCAGATGCCAAGAAAGGTCTCATTTCTTCAGCATCCCTTTACCATAGACTGCTACAAATTGAGTTTCACTACACCCAACTGTTAGGTGAAACATCACCAATGGCTGAACTAAGAGACCTTAGCTCTTGCAATAACTAA
Predicted protein sequences of Glyma19g38830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38830.1 sequence type=predicted peptide gene model=Glyma19g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVVKMMRWRPWPPLLSKKFQVRLHVRRLQGCDLLQNAALQGSRLVLEIRWKGPKLILGSLRWNSVARNFTKEADFELDGGGAAVVHWDEEFQTMCNLNGYRDNVFHPWEIAFTLFNGLNQRPKNKVPAIGTALLNIAEFASSTDQKDFDLNIPLTLTGGSGEPSPLLCISISLMELSVAQESLEPVQRSIVPVPSPSAKSGETALAEKDELSAIKAGLRKVMILTEFVSPKKAKKGCREEEGSEGRCSRSEDGEYNYPLDSESLDDSEEGETDGGKEDSSVRKSFSYGTLASANAGGFFHSNARVNCNDEDWVYYSHRKSDVGCSQREDSTASSSQPYLVQSSKRSILPWRKRKLSFRSPKAYKGEPLLKKVYAEEGGDDIDFDRRQLSSDESLSLTWYKIEDDTSAHRSSISDFGDDSFAVGSWEQKEVTSRDGHMKLQTQVFFASIDQRSERAAGESACTALVAVIADWFQNNCDLMPIKSQLDSLIREGSSEWRNLCENDAYRERFPDKHFDLETVIQAKIRPLTVAPGKSFIGFFHPEGMDEGRFDFLHGAMSFDNIWDEISRAGQECPSNGEPHIYIVSWNDHFFILKVEYDCYYIIDTLGERLYEGCNQAYILKFDSNTMMYKTPNVAHSSDDKTSNDQQTVAEILDPNNSQTQQVNSKEVDSVAGEKEQLRTEQEEQVICRGKEACKEYIKSFLAAIPIRELEADAKKGLISSASLYHRLLQIEFHYTQLLGETSPMAELRDLSSCNN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
