SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06470 | AT | Annotation by Michelle Graham. TAIR10: Glutaredoxin family protein | chr5:1974659-1975378 REVERSE LENGTH=239 | SoyBase | E_val: 2.00E-59 | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1752 | KOG | Glutaredoxin and related proteins | JGI | ISS | |
| PTHR10168 | Panther | GLUTAREDOXIN | JGI | ISS | |
| PTHR10168:SF44 | Panther | GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTE | JGI | ISS | |
| PF00462 | PFAM | Glutaredoxin | JGI | ISS | |
| UniRef100_D7LZQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutaredoxin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZQ8_ARALL | SoyBase | E_val: 5.00E-59 | ISS |
| UniRef100_UPI0001BA8B35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8B35 related cluster n=1 Tax=unknown RepID=UPI0001BA8B35 | SoyBase | E_val: 0 | ISS |
|
Glyma19g38820 not represented in the dataset |
Glyma19g38820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g36181 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g200900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g38820.1 sequence type=CDS gene model=Glyma19g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGAGGAAGGTTTGTGAGAAAACTAAAACTCGTCCCAACCATAACCAACTTGAAGAAACAAGACCTAGTTCTTCAGAAAAAGTTCCCAACCTCATATGATGACTACAAAGGGAACAACCTACCCGAGCTAGCGGTTAAGGATGATAATCATTTTGAGGAGGAAGAAGCCACCGTTGGTTCCAAAAAGATCACAGAACTCGCAGAAGAAAAGTTAGTGATTACTAAAATGCCATCGTGCAACAATAATGAATACCCATCTCTCAGTGACTTCAAAGAGTTACGTCCACAAGGGGGGAATAGCCACTCAATCATTCTCTACACAACAAGCTTGAGAGGGATAAGGAAAACCTTTCAGGACTGTAACACGATCCGTTTCTTGTTGAGGAGCTTCAAAATAATGTACCATGAGAGGGACGTGTCTCTTCACTTGGAGTTCAGAGAGGAGTTGTGGAAAATCTTGGGAGGGAAAGTGATTCCCCCGAAGCTTTTCATCAAGGGAAGGTACATTGGAGGAGCTGATGAAGTGGTTGGGTTGCATGAGATGGGGTGGCTTGGGAAGTTTCTAGAAGGAACACCAACTCACTCTAGTGATTCTCCTTGCACTGGCTGCGCCAACATGAGATTCACTATTTGTTCCAACTGTTGTGGAAGTTGCAAAGTGTTCACTGACAATAGCGACAACAAAAACAACGATGAATGCTTCGTTAGATGTTCTTTGTGCAACGAGAATGGCCTTGTCAAATGCCCCGTTTGCTGCTAG
>Glyma19g38820.1 sequence type=predicted peptide gene model=Glyma19g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVRGRFVRKLKLVPTITNLKKQDLVLQKKFPTSYDDYKGNNLPELAVKDDNHFEEEEATVGSKKITELAEEKLVITKMPSCNNNEYPSLSDFKELRPQGGNSHSIILYTTSLRGIRKTFQDCNTIRFLLRSFKIMYHERDVSLHLEFREELWKILGGKVIPPKLFIKGRYIGGADEVVGLHEMGWLGKFLEGTPTHSSDSPCTGCANMRFTICSNCCGSCKVFTDNSDNKNNDECFVRCSLCNENGLVKCPVCC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
