Glyma19g38710 - SoyBase

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Report for Sequence Feature Glyma19g38710

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45572930
stop:	45575485
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11680	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr3:3686995-3689329 REVERSE LENGTH=488	SoyBase	E_val: 0	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_B2LUQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter n=1 Tax=Glycine max RepID=B2LUQ7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E2FB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2FB related cluster n=1 Tax=unknown RepID=UPI000233E2FB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g38710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g199900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38710

Limit To All Plant Sequences

>Glyma19g38710.2   sequence type=CDS   gene model=Glyma19g38710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGAGTCAACAACGCAAGTAAACAAGGGTGGATTTTTTTCTCGTTTGGGGAACTGCCTCGTGGCTATGCCTAGGAACTTCAAGACCAAGGTTATCAACTTCGCAAGAAGCATAACAAAGATTGGAAAAGATGACCCCAGACGAGTAATTCACTCATTAAAAGTGGCAATTGCTCTCACATTTGTGTCCTTGGTTTACTACTCAAGGCCTCTTTATGATGGCTTCGGAGTTGCGGGAATGTGGGCTGTTCTGACAGTGGTGGTAGTGTTTGAATTCAGCGTAGGTGCAACCCTTAGCAAAGGTTTAAATAGAGGATTTGCTACATTATTAGCTGGTGCTTTAGGGGTTGGAGGGCAACACTTGGCCACTGCTTTTGGAGAAAGAGCAGAACCTATTGTCCTTGGAATCCTGGTCTTCAGTTTAGCCGCAGGGGCTACTTTTTTCAGATTTTTTCCAAAAATCAAGCAAAGATATGACTATGGGATTGTGGTATTTATATTGACATTTTGTTTGGTCGCTGTCTCGGGTTATAGAGTGGAAGAACTCTTCGAGCTTGCTCATCAGAGACTTTCAACAATTTTAATAGGAGCAGCAGCTTGCATGGTCATCTCCATTTTCATTTGTCCAGTATGGGCAGGTGAAGACCTTCACATGTTGGTGGCTTCCAATATTGAAAAGTTGGCAAATTATCTAGAAGTATTCGAAACCGAATATTTTCATTGCTCGGAGGATACAAAAAAGTGTGAGAAGTCAGTTCTTGAAGGATATAAAAGTGTTCTTAATTCTAAAGCAAGTGAAGAATCCTTGGCAAATTTGGCAAGGTGGGAACCAGGACATGGCCGTTTTCCTCTTCGTCATCCTTGGAAGCAGTACTTGAAGATTGGAGCACTTACTCGTGAATGTGCTTACAAGATTGAAACCCTTAACAACTACCTCAACCCGGAAATCCAAGTATCTTTGGAATTCAAGTGTAAAGTTCAGGCACCATGCACAAAGATGACTTCAGAGTCCAACAAGGCATTAAAGGCAATATCTTCATCAATCAAAAAAATGACACACCCATCAGCTGCCAAAGTTCACATAGAAAATTCAAAAACTGCAATTGAAAACCTCAAAGTTGCCCTTGAAATCGTTTCGTTGAAAAATACTGATCTCCTCACCATAATCCCAGTTGCCACAGTTGCATCAATACTCGAAGAAATCACCAAGTCAGTGGAGAAAATATATGAGTCTGTTTCTGAGTTTTCTCACTTAGCCCACTTCAAGAGTGTTGTAGAACCCAATGTCTCACCAGAGAAGCCTCCCCTTCTTCATCGAGGTATCATAAAACCTGTTGTGGATATTGATAACACCGTCGACCATGTTGAAATTACGATCCCAGATATAACTACAGACTCTCTAGAGAAAGAAAAAGCACCAATAACAAAACCCTCCGAACATTTGTAA

Predicted protein sequences of Glyma19g38710

Limit To All Plant Sequences

>Glyma19g38710.2   sequence type=predicted peptide   gene model=Glyma19g38710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIESTTQVNKGGFFSRLGNCLVAMPRNFKTKVINFARSITKIGKDDPRRVIHSLKVAIALTFVSLVYYSRPLYDGFGVAGMWAVLTVVVVFEFSVGATLSKGLNRGFATLLAGALGVGGQHLATAFGERAEPIVLGILVFSLAAGATFFRFFPKIKQRYDYGIVVFILTFCLVAVSGYRVEELFELAHQRLSTILIGAAACMVISIFICPVWAGEDLHMLVASNIEKLANYLEVFETEYFHCSEDTKKCEKSVLEGYKSVLNSKASEESLANLARWEPGHGRFPLRHPWKQYLKIGALTRECAYKIETLNNYLNPEIQVSLEFKCKVQAPCTKMTSESNKALKAISSSIKKMTHPSAAKVHIENSKTAIENLKVALEIVSLKNTDLLTIIPVATVASILEEITKSVEKIYESVSEFSHLAHFKSVVEPNVSPEKPPLLHRGIIKPVVDIDNTVDHVEITIPDITTDSLEKEKAPITKPSEHL*

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