Glyma19g38690 - SoyBase

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Report for Sequence Feature Glyma19g38690

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45537035
stop:	45542166
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35940	AT	Annotation by Michelle Graham. TAIR10: BEL1-like homeodomain 1 \| chr2:15089171-15091699 REVERSE LENGTH=680	SoyBase	E_val: 1.00E-172	ISS
GO:0000303	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to superoxide	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009743	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0010201	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to continuous far red light stimulus by the high-irradiance response system	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF14	Panther	BEL1 HOMEOTIC PROTEIN	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF07526	PFAM	Associated with HOX	JGI		ISS
UniRef100_I1NAU4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAU4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PF41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BEL1-like homeodomain transcription factor n=1 Tax=Trifolium pratense RepID=Q2PF41_TRIPR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38690

Paralog	Evidence	Comments
Glyma03g36070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g199500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38690

Limit To All Plant Sequences

>Glyma19g38690.1   sequence type=CDS   gene model=Glyma19g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCGGGTGGCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGCAGCAGCAGCAGCAGCAATCCTCACTCGCCGCCGGAAACCTCGTGTTTCTCAACCCTGCCGCGGTTGCCGGGGGCAACAACAACTCGTTTAACCCCCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGGGTCCCTCTCCCTAATTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAATCCCTGGAACGCGTTCGACCCCACCTCGGCGGCGCGTGAGACTCCACGCGCACAGCAGGGGCTGTCTTTGGGGTTGGGGTCGTTCCGGGAGGGTCAGGCCCCGGCCATGTCCGGCGACGACCTGCGCGTGTCTGGCGGGTCACCGTCATCGGCTTCTGGGGTTACTAACAATGGAGCTTCGGGCATTCATAGCGTGCCTTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGCGAATGTCAACAACGGGATTGGCACTGAGTTGAGGAAAAAGAGTGGGGGACAGACCAGGGTGATTGGAGAATCATCCGCAGCAGGAAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGGAAGCGTAGCTCAGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCATCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCCTTGCATTGCAAACAATTTCGAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAAGTTCGAACTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATGGAAGGTTCGCGGCTCAAATATGTTGACCATCATCTTCGGCAACAGCGAGCACTTCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACATGGAGGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTTCGAAAATGTCAGCCCCACAAGACAAAGGTCCTTCCAATGAAACCGAAGCTAAGAGTTTTAATTCCAAACAAGAAGTTTCCAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCTTCAACATCACCACTTGGTGTGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGATGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCATTGAACATGGATGTGAAGCCCAATGATGAAAACAGTGAGCAGCTCTCAATGAGATTTGGGGTTGAAAGGCAAGGCAGAAATGAGTCCTCTTTCATGGGAAACCAAACAAACTTCATTGGTGGGTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAATTTACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTACCAAACCAAAACATTCAACTTGGAAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTGCCATAAGCACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA

Predicted protein sequences of Glyma19g38690

Limit To All Plant Sequences

>Glyma19g38690.1   sequence type=predicted peptide   gene model=Glyma19g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATYFHHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPQQQQQQSSLAAGNLVFLNPAAVAGGNNNSFNPHAPPSHTQQFVGVPLPNSQDLNHHSMHAHHDVSALHGFLPRMQYNPWNAFDPTSAARETPRAQQGLSLGLGSFREGQAPAMSGDDLRVSGGSPSSASGVTNNGASGIHSVPLSSKYLKAAHELLEEVANVNNGIGTELRKKSGGQTRVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYQQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRTANKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDHEQNGSEDKSSKSNEDSSSKMSAPQDKGPSNETEAKSFNSKQEVSKSQNTAMVSVSRPSTSPLGVNVRNQSGFSFMGSSELDGITQGSPKKPRNHEMMHSPNSVPSLNMDVKPNDENSEQLSMRFGVERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVT*

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