Report for Sequence Feature Glyma19g38680
Feature Type: gene_model
Chromosome: Gm19
Start: 45531148
stop: 45533793
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G05675 AT
Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein | chr3:1658425-1659859 REVERSE LENGTH=441
SoyBase E_val: 0 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
UniRef100_B9SDI5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SDI5_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1NAU3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAU3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g38680
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g38680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g199400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38680
Coding sequences of Glyma19g38680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38680.1 sequence type=CDS gene model=Glyma19g38680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACCTATTGGTAAAGAAGAAAAAATTGCTTGTGTGATTGGTGACCGATCAACTAGTGATGTTGATGTGAGGCTACGCACACAGGAAGGTCGAGATGATTGGCTATACTGCCACTCAGAGATTCTTGTGAAGAATTGCAAGTATTTTGCCGATCGGTTGTCTGAGAACTGGCCAACATGTCAGATCCTTGATTCACGCAACTGTGTTGATGTCTATTGCCAAGAGTTGAATTTTGATTACCATGTAAATCTTATACGCCTTCTCTACATTGTCGTAGATAGTTCAGTTGATGATTTGTGGCATGGTGTTAGGAATTCCCTTGGCATTCTCCAGGTCGCAGTTGAGCTTGGATGCCCACAAATTGTAACTGCCTGTGTGAATTACTTAGAAGCGGTGACATGGGAAGAGGCTGAGGAGGATGAGATATTGAAAATTGTACCTCGAATGGGATTACAGGCAGAGCCTATCCTAGCTAGACTTCAACCAGTTAACCAGTCTGCTATTGTAAACATCTTTGTCTCTGCCCTCCGCTTTGCTACATCATCCCCACCTCCACAAATGAATGATCTTAAATCTTCAGCGCAAGAGCAACTTGAGTACATGCTAACTGAAGATGATGATGCCCCTTTGTTGACAGCTGATGACAACATAAAACTTGAGGTAAAAGAATGTGTAAACAGACTATTTTCCCAGTTTAATGACTCATTAACAGCTTTGTTCTGTGGTTCCACAGAATCACTCTCTGGGGCTGGAAATATTCAGTTGTTTAAATCCTATTTGACTGATTTGTCATGGGCTTGTCAGATATTGAGTAAGTTGGAAATTATGAGGGAATTTGTCGTGTATTGGTTTGATGCATCGGATAAGATTGTCAAGGTGCTTGAACAAGGAAGTTCTACAACTGAAGTAATTGAGATAAAATTAAGAGCTATTGAGGTGACATCCAAGGTGTTAGAGGCAATTGGGTATGGCACTGTTATATTGCCAACTGCAAAACGCCTTCAGGTCTTGAAAGTGTGGCTTCCATTTGTGAGGGTTACAAAACCATTGATTGATTCTGTCACCATGAATTGTGAGAATGCCATGCTGCTTAAATTAGATGGTGAAATGTGGCAATCCTTAGAATCCACATTTGTCTCCATCATTCTTGCATTGCCATCAGGGGATCAGGCAGAGGTTTTAACTGAGTGGCTGGATAACGAGTACATGCAGTATCCAGACTTAACTGAGGCATTTGAAGTGTGGTGTTATAGGTCCAAGGTTGCCAAGAGAAGACTATCATTGCTAGAGGATGAGCATGCCATGACCAACTCATTTTGA
Predicted protein sequences of Glyma19g38680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38680.1 sequence type=predicted peptide gene model=Glyma19g38680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPIGKEEKIACVIGDRSTSDVDVRLRTQEGRDDWLYCHSEILVKNCKYFADRLSENWPTCQILDSRNCVDVYCQELNFDYHVNLIRLLYIVVDSSVDDLWHGVRNSLGILQVAVELGCPQIVTACVNYLEAVTWEEAEEDEILKIVPRMGLQAEPILARLQPVNQSAIVNIFVSALRFATSSPPPQMNDLKSSAQEQLEYMLTEDDDAPLLTADDNIKLEVKECVNRLFSQFNDSLTALFCGSTESLSGAGNIQLFKSYLTDLSWACQILSKLEIMREFVVYWFDASDKIVKVLEQGSSTTEVIEIKLRAIEVTSKVLEAIGYGTVILPTAKRLQVLKVWLPFVRVTKPLIDSVTMNCENAMLLKLDGEMWQSLESTFVSIILALPSGDQAEVLTEWLDNEYMQYPDLTEAFEVWCYRSKVAKRRLSLLEDEHAMTNSF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
