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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52450 | AT | Annotation by Michelle Graham. TAIR10: plant U-box 22 | chr3:19440943-19442250 REVERSE LENGTH=435 | SoyBase | E_val: 2.00E-169 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0051865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| PTHR13931 | Panther | UBIQUITINATION FACTOR E4 | JGI | ISS | |
| PTHR13931:SF9 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| UniRef100_B9SDI7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9SDI7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NAU2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAU2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g38670 not represented in the dataset |
Glyma19g38670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g199300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g38670.1 sequence type=CDS gene model=Glyma19g38670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGAAATCGATGTTCCTTCGTTCTTTCTCTGCCCCATTTCGCTAGATATCATGAAGGATCCAGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACCTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATTACCAAACTGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGTAGACTCATCCAAGCGTGGTGTTCCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACCCCTAAACCCCCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCACATGCCTCAGAAGACTCAAATCCATCTCTTCCGGAAGCGAAACAAATAAGCGGTGCATGGAGGCTTCTGGCGCTGTTGAGTTTCTAGCATCAATTGTAATCAACACCAACCGCAACATTGATTCTTCACATGAGGCTGACTCAAACGACGGATCTGGATTCGAGTTGAAAACAAGTGCATGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCCGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCTGTGTTCTTGTTGAAATCTATTTCCGAAGTGGCTGAACCAGTGCAACTATTGCATCTAAGACAAGAACTTTTTGTCGAACTGGTACAAGTCCTGAAGGATCAAATTTCACAGAAGACATCAAAGGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAGAGCTGTGGAAGCAGGTGCTGTTCCTGTTTTGATTGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGTTGTTGGAGCTGCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGCCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTCTTTCGAGGTTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAGGGCTAAGGAAAAAGCTAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACCCGAATTATGTGTGA
>Glyma19g38670.1 sequence type=predicted peptide gene model=Glyma19g38670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNEIDVPSFFLCPISLDIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKLPLIDYTDLTPNHTLRRLIQAWCSMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLRRLKSISSGSETNKRCMEASGAVEFLASIVINTNRNIDSSHEADSNDGSGFELKTSACDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSISEVAEPVQLLHLRQELFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIRAVEAGAVPVLIELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHAAGLAIVSKKILRVSTLANDRAVKIILSLSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNRAKEKAREILKLHARAWRNSPCIPNNLLNSYPNYV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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