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Report for Sequence Feature Glyma19g38635

Feature Type:gene_model
Chromosome:Gm19
Start:45504776
stop:45509474
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38635
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31400AT Annotation by Michelle Graham. TAIR10: damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345 SoyBaseE_val: 1.00E-98ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003684GO-mf Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding SoyBaseN/AISS
GO:0003887GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity SoyBaseN/AISS
KOG3014 KOG Protein involved in establishing cohesion between sister chromatids during DNA replication JGI ISS
PTHR11076Panther DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER JGI ISS
PTHR11076:SF4Panther MUCB FAMILY JGI ISS
UniRef100_G7IMD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase ESCO2 n=1 Tax=Medicago truncatula RepID=G7IMD6_MEDTR SoyBaseE_val: 9.00E-122ISS
UniRef100_I1NAU0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAU0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g38635
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38635 not represented in the dataset
Glyma19g38635 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g38635 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g38635
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g38635
>Glyma19g38635.1   sequence type=CDS   gene model=Glyma19g38635   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGAATACCAAAATACACCTTCCTGGTTTCAGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCATTTGACCATCCTGTGATATGTCTTGTAGCTGTTTCATCAAAGGATGAACAACCTATTAGCAGATTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAGTTTCAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCCCTGCAGACAGAGCAAGTAAAAGATTGACAGATATGAGGAGTACATTTGGGGCAAGTGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATGCTCCAATCAAAAATCAAGATAATCCTTGGGCTTCATATATAACTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAACATTGATGATATCAACGAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTAGGAGATTATGAAGTTGCCTTGTCAAATTATCGCCTAATTTCCACCGAATACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGATGCAGTCCAAGATTAGCGCTTTCTTCAAATCTACTACCTCCGATTCCTCTTCCGTCTCTGCCGACAATGACGACGACTTGTCCATCTGGGAGAAGCAGCAACACCATATCATCAACACCTACACCCGAAGGCCTCCAAACCCTAACGCCGTTATTCCTTCGGTGGTCAAAAACAAGAAGAGGAGCTACGCCCAATTCCACCTCGATTTCGGCCAATCCGATTTCCTCTTACGCGCCTGTTCCACTTGCGGAATCAATTTCACTCCCGGCGACCCAGACGACGAGAAATCCCACAACCACTTTCACAAATCCTACACCCAGGGGATACAATTCAGAGGTTGGACCAAAGAAAATGTTATCCCTCTTCCCACCCTCGAAGCGGGTCGAATCATTTTGGTTTCGGAGATCGACCTCACTTCTCACAGAAGAATAGTTGAGCAGGTCGTGAGTATGATGGAAATTGAGCTTGGGTGTGGATGGATCCTTCACGACCTCTTTAAGGTGTATCTGTTTGTTTCTCTTCACAGGGTTGTTGGGTGCCTCGTTGCAGAACCAATTGAAAAGGCATTCAAAGTTGTGTCTGGCTCTCCTGATAGCGTGAAGAAAAGGGAAGTGAGGACGCGTTCTACCACTTTTCGGTTTGGGAATGTTATTTTCCAAAGGGAGGTTGAAAAAAAAGTTGCTTCCTTGAGTGATTCTGAAAGGATGGAAGGTGCAATCTTCTGTGATAGCAAACCAACCATCGCTGCTTGTGGCATTAGGGCCATTTGGGTTGCTCCCTCTAACAGAAGAAAAGGAATTGCAAGCAAATTGCTTGATGCCGTGAGGAAGAGTTTCTGCAAGGATCTTGAGCTTGAACGTTCTCAACTAGCATTCTCTCAGCCAACCTCAGCTGGAAAGGCATTGGCAACAAGTTACACTGGCACTGGATCATTCTTGGCGTATTAA
Predicted protein sequences of Glyma19g38635
>Glyma19g38635.1   sequence type=predicted peptide   gene model=Glyma19g38635   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SEYQNTPSWFQFLNKELVRVASFSDHEAFDHPVICLVAVSSKDEQPISRFVDLFNTNKLPSLLNDGAMDPKVSKHYLLVHDNQDGPADRASKRLTDMRSTFGASDCSLLCINSSLDAPIKNQDNPWASYITDASPTPSQDLGCFLNIDDINEIRVLGDYAFMLGDYEVALSNYRLISTEYKIDKAWKRYAGVQMQSKISAFFKSTTSDSSSVSADNDDDLSIWEKQQHHIINTYTRRPPNPNAVIPSVVKNKKRSYAQFHLDFGQSDFLLRACSTCGINFTPGDPDDEKSHNHFHKSYTQGIQFRGWTKENVIPLPTLEAGRIILVSEIDLTSHRRIVEQVVSMMEIELGCGWILHDLFKVYLFVSLHRVVGCLVAEPIEKAFKVVSGSPDSVKKREVRTRSTTFRFGNVIFQREVEKKVASLSDSERMEGAIFCDSKPTIAACGIRAIWVAPSNRRKGIASKLLDAVRKSFCKDLELERSQLAFSQPTSAGKALATSYTGTGSFLAY*






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