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Report for Sequence Feature Glyma19g38580

Feature Type:gene_model
Chromosome:Gm19
Start:45462303
stop:45463330
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35980AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:15110635-15111318 FORWARD LENGTH=227 SoyBaseE_val: 7.00E-63ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR19957Panther SYNTAXIN JGI ISS
PTHR19957:SF11Panther SYNTAXIN-RELATED JGI ISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_C6TFU0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFU0_SOYBN SoyBaseE_val: 6.00E-168ISS
UniRef100_Q8S8Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein B13-1-9 n=1 Tax=Glycine max RepID=Q8S8Z8_SOYBN SoyBaseE_val: 4.00E-107ISS

Expression Patterns of Glyma19g38580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38580
ParalogEvidenceComments
Glyma03g35930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g198700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g38580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g38580
>Glyma19g38580.1   sequence type=CDS   gene model=Glyma19g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATAAGCAACCCCACCTGAACGGTGCTTATTACGGTCCCGCCATTCCCCCGGCGGAGCAACCACGCTACCGCCCTCACCGCGAAAGAAGCTGCTGCTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGCACTCATTGTCCTCGTTGGCCTCGCAGTACTCATATTCTGGCTGGTGGTTCAACCCCGCTACTTCAAGTTCTACGTCACGGAAGCCGACCTAACACAATTTGATTACTATAGCAACAACAACACCCTCCACTACAACATGGTCCTCAACTTCACTGCACGCAACCCCAACAAGAAGCTCAGCATATACTACGACAAGGTTGAGGCATTAGCATTCTACGAGGATGTCAGGTTCGCCAATTACAGTGTGATAACGCCCATGAACTCCTTCCGGCAGTACAAGAAGAGCAGCAGCACCATGAGCGCTGTTTTATCGGGGCAGCAAGTGTTGCCGCTCGACAACGACCTAGTCTCAGAGTTGAACCAAGACAAGATTGGTGGGGTGTACGAGATCTATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTCGGGGATGTCAAAACCCGTCGCTTCAAGCCCAAGGTCAAATGTGATGCGAAGGTTCCCTTGAGGACCATGGGCAACGTAACTCTGTTTCAGACCACCAAGTGTGATGTCGATTACTAG
Predicted protein sequences of Glyma19g38580
>Glyma19g38580.1   sequence type=predicted peptide   gene model=Glyma19g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADKQPHLNGAYYGPAIPPAEQPRYRPHRERSCCCCLFGILWKILVALIVLVGLAVLIFWLVVQPRYFKFYVTEADLTQFDYYSNNNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYEDVRFANYSVITPMNSFRQYKKSSSTMSAVLSGQQVLPLDNDLVSELNQDKIGGVYEIYVKLYFRIRFRLGDVKTRRFKPKVKCDAKVPLRTMGNVTLFQTTKCDVDY*






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