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Report for Sequence Feature Glyma19g38491

Feature Type:gene_model
Chromosome:Gm19
Start:45402951
stop:45407464
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11620AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:3669551-3671734 REVERSE LENGTH=312 SoyBaseE_val: 2.00E-34ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13390Panther LIPASE JGI ISS
PF10230PFAM Uncharacterised conserved protein (DUF2305) JGI ISS
UniRef100_B9SVY8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SVY8_RICCO SoyBaseE_val: 2.00E-35ISS
UniRef100_I1NAS7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NAS7_SOYBN SoyBaseE_val: 1.00E-94ISS

Expression Patterns of Glyma19g38491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38491 not represented in the dataset
Glyma19g38491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38491
ParalogEvidenceComments
Glyma03g35830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g197900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g38491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g38491
>Glyma19g38491.2   sequence type=transcript   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTTCTACATTTTCATTAAGATATGCAAGCTCCATTTTCCCTAAGTTCCCATCGATAACACTTCAAACTTATTAGGATTTCCTAATTTAATACATTTTTATAAACAATTACATTCGTAATATTTGGTCTTCCAGGATAAGGTTTAGTGCCAAGTGTTAGAATATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGATGCATGTTTTCTTTACAAGAACAAATCAATTACAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAAGCACGTTGGGTACACCATTGGCTTTTCTTTCGACTTTTGCTAGTAGTACAAGAGATGGCTGCTGGCTGGCTGCCAACTCAAAAATTGAAATCGGTACATATTGAAAACCTTGTTTACTAAATTACTAGTTACTACCAATAAAAG

>Glyma19g38491.3   sequence type=transcript   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTTCTTCTACATTTTCATTAAGATATGCAAGCTCCATTTTCCCTAAGTTCCCATCGATAACACTTCAAACTTATTAGGATTTCCTAATTTAATACATTTTTATAAACAATTACATTCGTAATATTTGGTCTTCCAGGATAAGGTTTAGTGCCAAGTGTTAGAATATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGATGCATGTTTTCTTTACAAGAACAAATCAATTACAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAAGGTTGACTCTTTTGCTATTGGCTTGTGTTATGTGAGTTTTCTAAGTTAATGTATAAATCGCAGAAAGGATTGAACCACTAATAAATTTGAAACAATGATAGCTGAGAAAAATCTTAGTTTCATTTATTTACCAATGCATCTAGTGCACTTAACAGTTTTAACATCACCATTAACTGTATTCTATGACTTAGTTAGTTAGCACCCATCTTCCAGTAGTACAAAGTAAACAATCGCCAACTGCATTCCATGACTTTACCACCCATCTCCCAGTTATAAAAAGTAAAAACAATTGCCAACTTCATTTCTTTGAACCTCCCCACTCTTTTTCGAGAAACTTAGTACACGTTTGTCAGGAACTCATCGTTGATGGATAGATGGATAGTGGATGAAGTGAAGTGAAATAGAATGTAAAAACA

>Glyma19g38491.4   sequence type=transcript   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTTCTTCTACATTTTCATTAAGATATGCAAGCTCCATTTTCCCTAAGTTCCCATCGATAACACTTCAAACTTATTAGGATTTCCTAATTTAATACATTTTTATAAACAATTACATTCGTAATATTTGGTCTTCCAGGATAAGGTTTAGTGCCAAGTGTTAGAATATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAAGGTGCTAACTTTCTCCTCGGCTTTTCTGGTTTGAAACAAACATCCAATCGCAGCACGTTGGGTACACCATTGGCTTTTCTTTCGACTTTTGCTAGTAGTACAAGAGATGGCTGCTGGCTGGCTGCCAACTCAAAAATTGAAATCGGTACATATTGAAAACCTTGTTTACTAAATTACTAGTTACTACCAATAAAAG

>Glyma19g38491.5   sequence type=transcript   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTTCTTCTACATTTTCATTAAGATATGCAAGCTCCATTTTCCCTAAGTTCCCATCGATAACACTTCAAACTTATTAGGATTTCCTAATTTAATACATTTTTATAAACAATTACATTCGTAATATTTGGTCTTCCAGGATAAGGTTTAGTGCCAAGTGTTAGAATATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAAGGTTGACTCTTTTGCTATTGGCTTGTGTTATGTGAGTTTTCTAAGTTAATGTATAAATCGCAGAAAGGATTGAACCACTAATAAATTTGAAACAATGATAGCTGAG
Coding sequences of Glyma19g38491
>Glyma19g38491.1   sequence type=CDS   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGATGCATGTTTTCTTTACAAGAACAAATCAATTACAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAA

>Glyma19g38491.2   sequence type=CDS   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGATGCATGTTTTCTTTACAAGAACAAATCAATTACAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAA

>Glyma19g38491.3   sequence type=CDS   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGATGCATGTTTTCTTTACAAGAACAAATCAATTACAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAA

>Glyma19g38491.4   sequence type=CDS   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAA

>Glyma19g38491.5   sequence type=CDS   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGGTGTGGACAGTAATTTGCATGCCAAACCCAGAAGGCGTGCTAATTTTCGATCATGCAATGTCTCAAGTTACACTTCTGAAGTTTTGGAGATTCAATCTGATGCTCCCACTCTTCATGTTCTGTTTTTTCCTGGAAACCCAGGTGTAATTTTATTCTACAAAGACTTTTTGGAATTTCTCTATGAGTTGCTGGAGGGAACTGCTTCTGTTACAGCTATTGGCCATGTTTCTCACTCAAGAAAGTTTTCAGAGGCACCAGATTGGACATTTATGAGAGAAAGGGAGGCTCAAAAGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCAGGTTCCTGGTATGGCCATATCTATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCGTTATGGGTGGCTCAGCATGTGGTAAACTTGATCAAGAATCCGATGGCTTGTTCAAACCAATAA
Predicted protein sequences of Glyma19g38491
>Glyma19g38491.1   sequence type=predicted peptide   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMGVDSNLHAKPRRRANFRSCNVSSYTSEVLEIQSDAPTLHVLFFPGNPGVILFYKDFLEFLYELLEGTASVTAIGHVSHSRKNLEHGCMFSLQEQINYKFSEAPDWTFMREREAQKAFLFGVDDHWGPLHLLEEISKQVPGMAISIERENHTHGFCCTEAGSLWVAQHVVNLIKNPMACSNQ*

>Glyma19g38491.2   sequence type=predicted peptide   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMGVDSNLHAKPRRRANFRSCNVSSYTSEVLEIQSDAPTLHVLFFPGNPGVILFYKDFLEFLYELLEGTASVTAIGHVSHSRKNLEHGCMFSLQEQINYKFSEAPDWTFMREREAQKAFLFGVDDHWGPLHLLEEISKQVPGMAISIERENHTHGFCCTEAGSLWVAQHVVNLIKNPMACSNQ*

>Glyma19g38491.3   sequence type=predicted peptide   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMGVDSNLHAKPRRRANFRSCNVSSYTSEVLEIQSDAPTLHVLFFPGNPGVILFYKDFLEFLYELLEGTASVTAIGHVSHSRKNLEHGCMFSLQEQINYKFSEAPDWTFMREREAQKAFLFGVDDHWGPLHLLEEISKQVPGMAISIERENHTHGFCCTEAGSLWVAQHVVNLIKNPMACSNQ*

>Glyma19g38491.4   sequence type=predicted peptide   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMGVDSNLHAKPRRRANFRSCNVSSYTSEVLEIQSDAPTLHVLFFPGNPGVILFYKDFLEFLYELLEGTASVTAIGHVSHSRKFSEAPDWTFMREREAQKAFLFGVDDHWGPLHLLEEISKQVPGMAISIERENHTHGFCCTEAGSLWVAQHVVNLIKNPMACSNQ*

>Glyma19g38491.5   sequence type=predicted peptide   gene model=Glyma19g38491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMGVDSNLHAKPRRRANFRSCNVSSYTSEVLEIQSDAPTLHVLFFPGNPGVILFYKDFLEFLYELLEGTASVTAIGHVSHSRKFSEAPDWTFMREREAQKAFLFGVDDHWGPLHLLEEISKQVPGMAISIERENHTHGFCCTEAGSLWVAQHVVNLIKNPMACSNQ*






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