SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma19g38480

Feature Type:gene_model
Chromosome:Gm19
Start:45399774
stop:45400849
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36026AT Annotation by Michelle Graham. TAIR10: Ovate family protein | chr2:15127265-15127816 FORWARD LENGTH=183 SoyBaseE_val: 5.00E-34ISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_B3H6R4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ovate family protein n=1 Tax=Arabidopsis thaliana RepID=B3H6R4_ARATH SoyBaseE_val: 3.00E-31ISS
UniRef100_I1NAS6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAS6_SOYBN SoyBaseE_val: 6.00E-116ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g35820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g197800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g38480.2   sequence type=CDS   gene model=Glyma19g38480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGCAAGTACTCACGGAAACACAGACACCACAGCAATGTCTGGCTCCAGAAAGAAGCTTCTTCTGAACACCGTGTCCGTGAAACTAGGCTGCGGCACCTGCAGAAGACCAAACCTGTGTCGCATATTCCACCCGAAGCCAAAACCCAAGAATCTTAACAACACTTACCGAAAGCACAAACATTCTTCTTCTTCTTCTTCCTTTTTTTCAGGCCAATGGGGTGGTGAGGACAAGTGTGACAGCACCAGCACCACCCCCACCCCCACCCCCACCAACACCACATTCTCACCCTACGTTGATTCCTCGCACTTTTCTGACTCAGATTCGTACGTGAAGGCCGTGGGGGGTTTAGGCAGAGCTGGGAAAGAAGGTGTGGCTGTGGAGAAAGACTCTGATGACCCTTATCTTGATTTCAGACATTCCATGCTGCAAATGATATTGGAGAATGAGATATACTCCAAGCAAGATCTCAGAGAGCTTCTCAACTGCTTTCTTCAGCTGAATTCACCGCACCACCATGGTGTCATAGTCAGAGCTTTCACTGAGATCTGGAATGCTGTTTTCTCTGTGAGGTCCAGTTCACACATCAACCGTAAGCCACGTGAGTTCTAA

>Glyma19g38480.2   sequence type=predicted peptide   gene model=Glyma19g38480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLASTHGNTDTTAMSGSRKKLLLNTVSVKLGCGTCRRPNLCRIFHPKPKPKNLNNTYRKHKHSSSSSSFFSGQWGGEDKCDSTSTTPTPTPTNTTFSPYVDSSHFSDSDSYVKAVGGLGRAGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIWNAVFSVRSSSHINRKPREF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo