Report for Sequence Feature Glyma19g38480
Feature Type: gene_model
Chromosome: Gm19
Start: 45399774
stop: 45400849
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G36026 AT
Annotation by Michelle Graham. TAIR10: Ovate family protein | chr2:15127265-15127816 FORWARD LENGTH=183
SoyBase E_val: 5.00E-34 ISS
PF04844 PFAM
Protein of unknown function, DUF623
JGI ISS
UniRef100_B3H6R4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ovate family protein n=1 Tax=Arabidopsis thaliana RepID=B3H6R4_ARATH
SoyBase E_val: 3.00E-31 ISS
UniRef100_I1NAS6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAS6_SOYBN
SoyBase E_val: 6.00E-116 ISS
Expression Patterns of Glyma19g38480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g38480
Paralog Evidence Comments
Glyma03g35820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g197800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38480
Coding sequences of Glyma19g38480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38480.2 sequence type=CDS gene model=Glyma19g38480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTAGCAAGTACTCACGGAAACACAGACACCACAGCAATGTCTGGCTCCAGAAAGAAGCTTCTTCTGAACACCGTGTCCGTGAAACTAGGCTGCGGCACCTGCAGAAGACCAAACCTGTGTCGCATATTCCACCCGAAGCCAAAACCCAAGAATCTTAACAACACTTACCGAAAGCACAAACATTCTTCTTCTTCTTCTTCCTTTTTTTCAGGCCAATGGGGTGGTGAGGACAAGTGTGACAGCACCAGCACCACCCCCACCCCCACCCCCACCAACACCACATTCTCACCCTACGTTGATTCCTCGCACTTTTCTGACTCAGATTCGTACGTGAAGGCCGTGGGGGGTTTAGGCAGAGCTGGGAAAGAAGGTGTGGCTGTGGAGAAAGACTCTGATGACCCTTATCTTGATTTCAGACATTCCATGCTGCAAATGATATTGGAGAATGAGATATACTCCAAGCAAGATCTCAGAGAGCTTCTCAACTGCTTTCTTCAGCTGAATTCACCGCACCACCATGGTGTCATAGTCAGAGCTTTCACTGAGATCTGGAATGCTGTTTTCTCTGTGAGGTCCAGTTCACACATCAACCGTAAGCCACGTGAGTTCTAA
Predicted protein sequences of Glyma19g38480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38480.2 sequence type=predicted peptide gene model=Glyma19g38480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLASTHGNTDTTAMSGSRKKLLLNTVSVKLGCGTCRRPNLCRIFHPKPKPKNLNNTYRKHKHSSSSSSFFSGQWGGEDKCDSTSTTPTPTPTNTTFSPYVDSSHFSDSDSYVKAVGGLGRAGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIWNAVFSVRSSSHINRKPREF*