Report for Sequence Feature Glyma19g38471
Feature Type: gene_model
Chromosome: Gm19
Start: 45382660
stop: 45385364
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38471
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G04820 AT
Annotation by Michelle Graham. TAIR10: ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260
SoyBase E_val: 1.00E-33 ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF04844 PFAM
Protein of unknown function, DUF623
JGI ISS
UniRef100_D7LY61 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ATOFP13/OFP13 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LY61_ARALL
SoyBase E_val: 3.00E-31 ISS
UniRef100_UPI000233E2F5 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E2F5 related cluster n=1 Tax=unknown RepID=UPI000233E2F5
SoyBase E_val: 1.00E-177 ISS
Expression Patterns of Glyma19g38471
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g38471
Paralog Evidence Comments
Glyma03g35810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38471 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g197700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38471
Coding sequences of Glyma19g38471
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38471.1 sequence type=CDS gene model=Glyma19g38471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCATTGTAACTTGCTACGTGTTGGCAGGAGCCACATCTGACTTGCCATTAATGCCCCTAATATTAGTTCCATTTCTAAAAAGCTCCAAAATTCATTTTGAATCTGCATTTGATTTCTCTCCCATGGGCAAGAAAATGAAGCTCCCTTCCTCTTCTTGGCCCTGGCCCTCCTGCCACCAACCGCGAACCCTCTCTTTCCGAGCCCAAAACGACGCCGCATACTTGGACACGCTGGAGAGCTCCGAGACTTCCTTCTTCACCGTCTCCCCTGACTCCGGAAGCTTCTCAACTGCCTCAGAAGAAGATTCTAGAAGACCCGACTCACTAGAGACCGTCATTCGCGGCTTGCGTTCCGACCGTCTGTTCTTCGAGCCAGACGAGACTAGTTCCATATTAGAAGCCAAAGCAGCAGCAGCAACAACAACAACAACAACAACGTTGCCGTTCAAAGACAGCGTTGTCATGTCCGTGGACTCCCAAGACCCTTACGTCGATTTCCGCAGGTCCATGGAGGAGATGGTGGAGGCGCAGTGCGTCAAGGGCTGGGAGGGTCTCCAAGAGCTTCTGTCTTGGTATTTGAAAGTCAACGGTAAAACCAACCACGGCTATATCGTTGGTGCTTTCGTTGATTTATTGTTCGCTTCTTCTTCCTCACTAGTTTCTTCTTCTGACAATAACTCCCACTCTCCTTCTTCCCCTTTATCGTTTTATAGCTCTTCCTCTTGCAGCACTCGCTGTGTTTCTTGTTTGGAAGCTGAGGTCGAGGTTCATAATAATGATATAGCTACTACTTCTTCTTTCTTGTTAGAACAAGTTAGGGAAGACCAGGCTTCATCTTCTTCTTCTACTTCTACTTCCTCTTTGAATTAA
Predicted protein sequences of Glyma19g38471
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38471.1 sequence type=predicted peptide gene model=Glyma19g38471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIIVTCYVLAGATSDLPLMPLILVPFLKSSKIHFESAFDFSPMGKKMKLPSSSWPWPSCHQPRTLSFRAQNDAAYLDTLESSETSFFTVSPDSGSFSTASEEDSRRPDSLETVIRGLRSDRLFFEPDETSSILEAKAAAATTTTTTTLPFKDSVVMSVDSQDPYVDFRRSMEEMVEAQCVKGWEGLQELLSWYLKVNGKTNHGYIVGAFVDLLFASSSSLVSSSDNNSHSPSSPLSFYSSSSCSTRCVSCLEAEVEVHNNDIATTSSFLLEQVREDQASSSSSTSTSSLN*