Glyma19g38450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g38450

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45361156
stop:	45365634
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36060	AT	Annotation by Michelle Graham. TAIR10: MMS ZWEI homologue 3 \| chr2:15143012-15143998 REVERSE LENGTH=145	SoyBase	E_val: 8.00E-97	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0031372	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0896	KOG	Ubiquitin-conjugating enzyme E2	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_E9JFV5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating family protein n=3 Tax=fabids RepID=E9JFV5_9ROSI	SoyBase	E_val: 6.00E-96	ISS
UniRef100_I1NAS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAS2_SOYBN	SoyBase	E_val: 5.00E-124	ISS

Expression Patterns of Glyma19g38450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38450

Paralog	Evidence	Comments
Glyma03g35791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g197500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g38450

Limit To All Plant Sequences

>Glyma19g38450.2   sequence type=transcript   gene model=Glyma19g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACATTAATTTTTGTACACACACACAGATTCCCCTCTTTCGAATTTCGATACTTTGATCAGATCCACAACACTTCTTCATCCATGACGCTTGGTTCTTCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTACAGTTCATAGTTTTTCACATGCTCTTAGCTTTTTACGTGCTTCAATGCAATGGTGCTGTGGTGGGAGGGGGTATACACAATGCTAACTGCTGTGTTTTTCATTTTGATTTCTCAATTGAAGTTGGGAATAAATACGAGATGTATTCAAAAGTGTGTTAAGAATCTCACTTTGACTAGTAATGTGGCCTAAATAGTGTATATAAGTAGGGAGTGACTCTCACCCCCATGAGCTAACTTTTGAAGATGAGTTTGGTTCAAACTCAAATTCTATGATAGTATTGTAGTCTATCCTAGTGATTGTTGTTGGATCTAATGATCTATCAAGTCACTTGTAATCTTGCAAACTTCACATTGCCCAGTCTCGATGTGAGGAGTGTGTGTTGGAGATCACACATTGATTAGTGATATGCCAAAATAGTGTATATAACCTCATGAGCTA

Coding sequences of Glyma19g38450

Limit To All Plant Sequences

>Glyma19g38450.1   sequence type=CDS   gene model=Glyma19g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCTTGGTTCTTCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACAGAGGTTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAACCTCCTGAAGTTGGTGCATATGTTATGTTTTTAAACGTCAACGTGATTCTCTCTCTGTGGATTTGGGGTTCTCACATTATCCAGTTTTGGTATTGA

>Glyma19g38450.2   sequence type=CDS   gene model=Glyma19g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCTTGGTTCTTCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTACAGTTCATAGTTTTTCACATGCTCTTAGCTTTTTACGTGCTTCAATGCAATGGTGCTGTGGTGGGAGGGGGTATACACAATGCTAACTGCTGTGTTTTTCATTTTGATTTCTCAATTGAAGTTGGGAATAAATACGAGATGTATTCAAAAGTGTGTTAA

Predicted protein sequences of Glyma19g38450

Limit To All Plant Sequences

>Glyma19g38450.1   sequence type=predicted peptide   gene model=Glyma19g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLGSSGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQQRFTMEDILTQLKKEMAASHNRKLVQPPEVGAYVMFLNVNVILSLWIWGSHIIQFWY*

>Glyma19g38450.2   sequence type=predicted peptide   gene model=Glyma19g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLGSSGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVQFIVFHMLLAFYVLQCNGAVVGGGIHNANCCVFHFDFSIEVGNKYEMYSKVC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain