Glyma19g38410 - SoyBase

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Report for Sequence Feature Glyma19g38410

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45324138
stop:	45329262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06260	AT	Annotation by Michelle Graham. TAIR10: TLD-domain containing nucleolar protein \| chr5:1902755-1904835 REVERSE LENGTH=424	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG2557	KOG	Uncharacterized conserved protein, contains TLDc domain	JGI		ISS
PTHR23354	Panther	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	JGI		ISS
PTHR23354:SF41	Panther		JGI		ISS
PF07534	PFAM	TLD	JGI		ISS
UniRef100_F4JJY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF-hand family protein n=3 Tax=Arabidopsis thaliana RepID=F4JJY3_ARATH	SoyBase	E_val: 5.00E-97	ISS
UniRef100_I1NAS0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAS0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38410

Paralog	Evidence	Comments
Glyma03g35770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g197300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38410

Limit To All Plant Sequences

>Glyma19g38410.1   sequence type=CDS   gene model=Glyma19g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACGTTCAGTCACCTCCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCATCAATCTGGCAAATCAATCCCAGAGCAACGGGAAATACATCTCTCCCTCCGTTTTTCAGTCATATTTTGGACTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAGGCTAACCTTTGAAGACCTCGTGGATGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTGGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCTATTTTTAACGATATATTATGCATAAAAGGTTCTGAGGATAGATCATGTTCACATCAAGATATTTTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCATGATGAAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTTCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGTCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGAGCACTCTCTCACCAAGACCTGGAAGATTGGAACCTTTTGTATCATAGTTCTCTCAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGGCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAATCTGCAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGCTTTGGGGGACGAGTGAATCACTTGGGTTTGTTTATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGTCTCTCCAAGACTAACCGTATATTGCCTGAAGTAATAGAATGCTGGGGAGTCACACAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

Predicted protein sequences of Glyma19g38410

Limit To All Plant Sequences

>Glyma19g38410.1   sequence type=predicted peptide   gene model=Glyma19g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNVQSPPNNDPRYVSATRAFTQKELEDLRSLFINLANQSQSNGKYISPSVFQSYFGLHGPLGERMFDLVTQERKDQRLTFEDLVDAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILCIKGSEDRSCSHQDIFNIFLNAANFSKHDEGGTEETMSFEDFRSWCTHLPSVRKLLGSLLLSPDSGRPGYQIPKLLTSKAIDSNIILLRKEYAWHIGGALSHQDLEDWNLLYHSSLNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

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