SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g38385

Feature Type:gene_model
Chromosome:Gm19
Start:45305397
stop:45306047
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38385
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G29765AT Annotation by Michelle Graham. TAIR10: General transcription factor 2-related zinc finger protein | chr3:11595467-11597077 REVERSE LENGTH=536 SoyBaseE_val: 1.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR11697Panther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN JGI ISS
PTHR11697:SF9Panther TRANSPOSASE-LIKE PROTEIN JGI ISS
UniRef100_Q01MM8UniRef Annotation by Michelle Graham. Most informative UniRef hit: H1005F08.16 protein n=1 Tax=Oryza sativa RepID=Q01MM8_ORYSA SoyBaseE_val: 9.00E-25ISS
UniRef100_Q6ATH8UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein OSJNBa0093E24.3 n=1 Tax=Oryza sativa Japonica Group RepID=Q6ATH8_ORYSJ SoyBaseE_val: 3.00E-28ISS

Expression Patterns of Glyma19g38385
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38385 not represented in the dataset
Glyma19g38385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g38385 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g38385
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g38385
>Glyma19g38385.1   sequence type=CDS   gene model=Glyma19g38385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAATGATGTTAAGTTATTTTATCAAGTGATTGATAGACAACTTCAAGAGTTAAACAATAGATTTACTAAGGTGAACATTGAGTTGCTTCTTTGTGTAGCAAGCTTAAATCCAAGAGATTCATTTTTTCCATTTGATAAGGAAAAGTTAATTTTTTTGACTAAGTTTTATCCATCAGAATTTTCTTCTTTGATTTTACCTATGACAACTGCAACAATTGAAAGATGTTCCTCTGCAATGAATTTCGTGAAGAATAAAAGGCAAAATTACATGGGAGATGAATGGTTGAATGATTGTTTAGTTACATACATAAAGACAAATATTTTTTATATTATTGACAATGAAAAATAA
Predicted protein sequences of Glyma19g38385
>Glyma19g38385.1   sequence type=predicted peptide   gene model=Glyma19g38385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNDVKLFYQVIDRQLQELNNRFTKVNIELLLCVASLNPRDSFFPFDKEKLIFLTKFYPSEFSSLILPMTTATIERCSSAMNFVKNKRQNYMGDEWLNDCLVTYIKTNIFYIIDNEK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo