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Report for Sequence Feature Glyma19g38351

Feature Type:gene_model
Chromosome:Gm19
Start:45268729
stop:45275946
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24280AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0005764GO-cc Annotation by Michelle Graham. GO Cellular Compartment: lysosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
GO:0008236GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity SoyBaseN/AISS
KOG2183 KOG Prolylcarboxypeptidase (angiotensinase C) JGI ISS
PTHR11010Panther PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED JGI ISS
PTHR11010:SF8Panther LYSOSOMAL PRO-X CARBOXYPEPTIDASE JGI ISS
PF05577PFAM Serine carboxypeptidase S28 JGI ISS
UniRef100_B9SX01UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal pro-X carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SX01_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E2F2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E2F2 related cluster n=1 Tax=unknown RepID=UPI000233E2F2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g38351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38351 not represented in the dataset
Glyma19g38351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38351
ParalogEvidenceComments
Glyma03g35710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g196700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g38351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g38351
>Glyma19g38351.1   sequence type=CDS   gene model=Glyma19g38351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGGCTTTCAGTTCATACTCACACTCTTCTCTCTATTTTCGGTTCCCTCACTCACTTTTGCTTTTGCCCCTATCCTTCCCAGATTTCCTTCTTCAGCAGTTAGTGCAGAGCTGAAGCAACGCTCACATTCTTCCCAAAATGGGCTTTACAGAACAAAATTCTTCACCCAGATACTGGATCACTTCAATTTCAATCCCCAAAGCAATCACACTTTTCAACAAAGGTATCTCATCAACGATACCTTTTGGGGTGGTGCCAAGAACAATGCTCCAATCTTTGTCTACACTGGCAATGAAGGGAACATAGAATGGTTCACACAAAACACGGGCTTTATGTTCGAAAATGCTCCTTCTTTTCAAGCCCTTTTGGTTTTCATCGAGCATAGATTTTATGGAAAATCAATACCATTTGGGGGAAACAAGACGGTTGCATATGCAAATACTAGCACACTTGGGTATCTCAGCTCAACACAGGCATTAGCTGATTATGCCGCTCTCATCATTGATCTGAAGAAGAATTTGTCAGCCACTGATTCTCCTGTTGTGGTTTTTGGAGGATCCTATGGAGGAATGTTGGCTGCTTGGTTCAGGATGAAGTATCCACACGTTGCAATTGGAGCTCTAGCATCCTCTGCTCCAATTCTCCATTTCATGGGTATGGTTTCGCCAGACATCTTCATCAGCATCATCACACAAGACTTCAGGAGCGAGAGTGAGAATTGTTACAAAGTGATAAAAGGGTCTTGGGATCTGATAGACGATACGGCCAATAAACCCGGAGGAATGGAACTGCTGCGGAAAACATTCAGAATATGCAAGAGCGATGATTTTGGGCCTGATTCTTTGGAAGGTTGGCTTCGGGCGGCGTGGATTTATACCGCCATGACAGATTATCCGACACCATCCAATTTCCTGAATCCCCTGCCTGCATATCCGGTGAAAAAGATGTGCGAGGCGATTGACAGCTCAGTAACGGGAAATAATAGATTAGCCAAGTTGTATGCAGCAGCCAATGTCTACTACAACTATACAGGCAAAGCAACGTGTTTCGATTTGGATGACAATTCTGATCCTCACGATCTTGGAGGATGGCAATGGCAGGCTTGTACGGAGATGATAATGCCCGTAGGTGGAAGCAATAAGGAGAGCATATTCCCAGAATATGAGTGGTCATACGAAGCAAGAGCCTCTTGGTGCGACTTTTTCTACAACGTACAGCCAAGACCACACTGGATTACTACTGAGTTTGGTGGCCATGCTATTGAGAGAGTTCTGAAAAGGTCTGCCAGCAACATTATATTCTTTAATGGTTTAAGAGATCCTTGGAGTGCCGGAGGGGTGTTAAAGACTATATCAAAAACAATAGTTGCTATTGTTGCAAAAAAAGGAGCTCATCATGTAGACCTAAGGTACTCGAGTAAGGAAGATCCACAGTGGCTTAAAGATGTAAGGAAACAAGAGGTAAATATCATAGCAAGTTGGATCTCACAATACCATCAAGACCTACAATCCAATAGCTAA
Predicted protein sequences of Glyma19g38351
>Glyma19g38351.1   sequence type=predicted peptide   gene model=Glyma19g38351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIGFQFILTLFSLFSVPSLTFAFAPILPRFPSSAVSAELKQRSHSSQNGLYRTKFFTQILDHFNFNPQSNHTFQQRYLINDTFWGGAKNNAPIFVYTGNEGNIEWFTQNTGFMFENAPSFQALLVFIEHRFYGKSIPFGGNKTVAYANTSTLGYLSSTQALADYAALIIDLKKNLSATDSPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILHFMGMVSPDIFISIITQDFRSESENCYKVIKGSWDLIDDTANKPGGMELLRKTFRICKSDDFGPDSLEGWLRAAWIYTAMTDYPTPSNFLNPLPAYPVKKMCEAIDSSVTGNNRLAKLYAAANVYYNYTGKATCFDLDDNSDPHDLGGWQWQACTEMIMPVGGSNKESIFPEYEWSYEARASWCDFFYNVQPRPHWITTEFGGHAIERVLKRSASNIIFFNGLRDPWSAGGVLKTISKTIVAIVAKKGAHHVDLRYSSKEDPQWLKDVRKQEVNIIASWISQYHQDLQSNS*






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