Report for Sequence Feature Glyma19g38290
Feature Type: gene_model
Chromosome: Gm19
Start: 45238140
stop: 45239837
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G36090 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr2:15158631-15159584 FORWARD LENGTH=317
SoyBase E_val: 3.00E-76 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
UniRef100_B9MYU0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9MYU0_POPTR
SoyBase E_val: 2.00E-91 ISS
UniRef100_I1NAR1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAR1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g38290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g38290
Paralog Evidence Comments
Glyma03g35660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g196400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38290
Coding sequences of Glyma19g38290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38290.1 sequence type=CDS gene model=Glyma19g38290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTGCATCGATAACACGGCCACCACCTCTACTGACGAAGCAGGCGGAGCCACCACCATCACCGCCGTGCATCCCGACATAATTCAAACCCACATCCTCACGTGCCTGGACGGCCCGTCGCTCGCCTCCGTCGCCAGCACGTGCTCCCAACTCCACGCTCTCTCAGCGCGCGAGCCTCTCTGGGAGAACATTTGCCACTCCACGTGGCCCTCCACGAGCTCGCCACGCGTCCGCCACGTCATGTCCACGTTCCCACGCGCGTCTCTGTCCTTTTTCTCCGACTCGTTCCCTTCGTTCGCCGCGGCGCGCGAAGGTTCTTCTTCGCGCGCACCGGAGCTGATTTCCGCTGTGGACATCTTCCACCGGCGGCGGGCGGTGCTGTCGAGAGTGGTGGAGACGGAGACGGAGTCCGACTGGTTCCGGTGCTCGCCGTTTCGAATCGATGTTCTTGATCAGAAGGAGGCAGTGGCGACGGCGATGGAGTATCCACGGAGCGAGGAAGCGTGTGAGATTCTGGGCGAGGATTTGAGGTTGAGTTGGATAGTGGTGGATCCGAATGGAAAGCGTGCGGTGAATGTGTCGAGTGGGAGAGTGGTGTCGGTGGAGCGGCACTGGCTGAGCGGGGAGGTGAAGGCGCGGTTCGCGACGGTGGTGGGCGGAGGGGAGAGGGGGACGGCGGTGGAGGTGGCGCTGTGCAGCGTGACTGTGACTTTCGGGGGTGAGATGCAGGTGAGGGAAGCGTGTCTGCAGATGGAGGACATGGATGGAATGTTCCTGAATGGTAGGGACAGTTTGGGGATTTTGCAGCGGGCATTGGAGGGTATAAGGGGAACATTACTGAAGGACGGAAAGGAGGAAGAAGGGAGGAATAGATACTTGGAATTCATAAAGAGAAAGATGGAGAGAAAAGATAAAAAAGAAAGAGATGAGAGGAGGTTGGATATGCTCTGCGTGCCTCTCGCGCTTTTGTCCTTTGCGGCTTTTTCTACACTCTTTCTCTTCTGA
Predicted protein sequences of Glyma19g38290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38290.1 sequence type=predicted peptide gene model=Glyma19g38290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MACIDNTATTSTDEAGGATTITAVHPDIIQTHILTCLDGPSLASVASTCSQLHALSAREPLWENICHSTWPSTSSPRVRHVMSTFPRASLSFFSDSFPSFAAAREGSSSRAPELISAVDIFHRRRAVLSRVVETETESDWFRCSPFRIDVLDQKEAVATAMEYPRSEEACEILGEDLRLSWIVVDPNGKRAVNVSSGRVVSVERHWLSGEVKARFATVVGGGERGTAVEVALCSVTVTFGGEMQVREACLQMEDMDGMFLNGRDSLGILQRALEGIRGTLLKDGKEEEGRNRYLEFIKRKMERKDKKERDERRLDMLCVPLALLSFAAFSTLFLF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
