Report for Sequence Feature Glyma19g38260
Feature Type: gene_model
Chromosome: Gm19
Start: 45219704
stop: 45222758
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G36130 AT
Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:15166863-15168259 FORWARD LENGTH=164
SoyBase E_val: 3.00E-103 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003755 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity
SoyBase N/A ISS
KOG0881
KOG
Cyclophilin type peptidyl-prolyl cis-trans isomerase
JGI ISS
PTHR11071 Panther
CYCLOPHILIN
JGI ISS
PTHR11071:SF41 Panther
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1, PPIL1
JGI ISS
PF00160 PFAM
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
JGI ISS
UniRef100_C6T1M9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6T1M9_SOYBN
SoyBase E_val: 7.00E-119 ISS
UniRef100_C6T1M9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6T1M9_SOYBN
SoyBase E_val: 7.00E-119 ISS
Expression Patterns of Glyma19g38260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g38260
Paralog Evidence Comments
Glyma03g35620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g196100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g38260
Coding sequences of Glyma19g38260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38260.2 sequence type=CDS gene model=Glyma19g38260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGGGAAAAGGAAAACTTGTAATGTAGAGGATTTTCAATTTTATATGTCCAAGCCCATGTGTAAGGCCCGGCCCGGCCAGGCCCAATTGAACGGTTTATTGTTTTGTTCATATATACGATACGAGAGACAGGGAAGGAGTGTCTGGTGTGTGAGCAAAATCAAAATGTGGGCAAGCGCCGCAGAAGGTGGTGCTCCGGAGGTGACTCTGGAAACTTCCATGGGTTCTTTCACCTTTGAGCTGTACTACAAGCATGCGCCGAGGACTTGTAGGAACTTCATTGAACTGTCTCGCCGAGGTTACTACGACAACGTTAAATTCCATAGGATCATTAAGGACTTCATAGTACAAGGTGGGGATCCCACTGGAACAGGAAGAGGAGGAGAATCCATATATGGTGCAAAGTTTGAAGATGAGATTAAACGAGAGTTGAAGCACACTGGAGCTGGAATCTTATCCATGGCAAATGCTGGCCCAAACACCAATGGTAGTCAGTTCTTTATTACTCTGGCTCCATGCCCCTCTCTCGATGGAAAACACACGATATTTGGAAGAGTGTGTAGGGGGATGGAAATTATGAAAAGACTTGGCAGCATCCAAACAGATAACAACGATAGGCCCATCCATAACGTGAAGATACTACGTACTTCAGTCAAGGATTGA
Predicted protein sequences of Glyma19g38260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38260.2 sequence type=predicted peptide gene model=Glyma19g38260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRGKRKTCNVEDFQFYMSKPMCKARPGQAQLNGLLFCSYIRYERQGRSVWCVSKIKMWASAAEGGAPEVTLETSMGSFTFELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIMKRLGSIQTDNNDRPIHNVKILRTSVKD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
