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Report for Sequence Feature Glyma19g38211

Feature Type:gene_model
Chromosome:Gm19
Start:45179582
stop:45181898
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g38211
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44350AT Annotation by Michelle Graham. TAIR10: NAC domain containing protein 61 | chr3:16022836-16024487 REVERSE LENGTH=241 SoyBaseE_val: 2.00E-73ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_B9SX20UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SX20_RICCO SoyBaseE_val: 5.00E-89ISS
UniRef100_UPI000233E17DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E17D related cluster n=1 Tax=unknown RepID=UPI000233E17D SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g38211
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g38211 not represented in the dataset
Glyma19g38211 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38211
ParalogEvidenceComments
Glyma03g35570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38211 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g195800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g38211
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g38211
>Glyma19g38211.2   sequence type=transcript   gene model=Glyma19g38211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTTTTAGTACCTTTGCCTAACTTTTTCAGTCATTGATTCTCCGAAGCCACTAGCACTTGATGATCTATATAGTATATAAATACATCACGATCGTGTAGTTCATGAGAATTGGTCTTCACCAATAACGAAGAAAAATTTCTCCTTGTTTGTACGGCACACAAGTGAGATCAAAGATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAACAAGCTTGAAGGAGAAAGGGAAGACATGAATCGAGTTATTCCAGTCGTTGATATATACGACTACAACCCATCTGAACTCCCACGTAAAAATCTTATATATATATATATATATACATATATATTTCCCTCATCTCCCTCTTTCTCTTTTCATTTTTCTAATTTTTTTTTCCTTTCAATCAAAATCGAGCTTGACTTGAAAGCTATGGTACAAGTTGATTTATTGCATATATATAGAAGCAAAGCACATTCTGGATAATTTAAGAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGAACACATCCAATCCAATCTATCTGTGCTTTGTTGGTATGCTACAACAAAGTTGACTCTCAAGTCTCAGCTACACCGATGACTGAATAAGTAGTAGGTTATGTTAATTAATTGTGTATGTCGCACCGCATGCAGAACAACTACTTTAAATATTTGTTAGATTTCTTGCTAGCTTTATAAAGTTGTGTATAGTGGCTAATTTGTCTGATAAATTATCACAAAGTCTTCATCTTGTGATCTATGGTACCAATATCTCCCCGTCTTCATGCAAATCCTTAGGAATCAAAGATTTGAACAAATTCTTCATTCATACGACGACAATCTAATATTAAACAAATTTCACCGACCCTTGTA
Coding sequences of Glyma19g38211
>Glyma19g38211.1   sequence type=CDS   gene model=Glyma19g38211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAACAAGCTTGAAGGAGAAAGGGAAGACATGAATCGAGTTATTCCAGTCGTTGATATATACGACTACAACCCATCTGAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGA

>Glyma19g38211.2   sequence type=CDS   gene model=Glyma19g38211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGA
Predicted protein sequences of Glyma19g38211
>Glyma19g38211.1   sequence type=predicted peptide   gene model=Glyma19g38211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSELPQISGEASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTLRKEFNLCRVYKKSKCLTAFDRRPPPRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHGEEATQMDVDNNDDPFLDWEKVDMFLGSEP*

>Glyma19g38211.2   sequence type=predicted peptide   gene model=Glyma19g38211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTLRKEFNLCRVYKKSKCLTAFDRRPPPRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHGEEATQMDVDNNDDPFLDWEKVDMFLGSEP*






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