Glyma19g38170 - SoyBase

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Report for Sequence Feature Glyma19g38170

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45154785
stop:	45156121
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52590	AT	Annotation by Michelle Graham. TAIR10: ubiquitin extension protein 1 \| chr3:19505668-19506681 FORWARD LENGTH=128	SoyBase	E_val: 2.00E-90	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0003	KOG	Ubiquitin/60s ribosomal protein L40 fusion	JGI		ISS
PTHR10666	Panther	UBIQUITIN	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
PF01020	PFAM	Ribosomal L40e family	JGI		ISS
UniRef100_B3TLP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin fusion protein n=9 Tax=Spermatophyta RepID=B3TLP6_ELAGV	SoyBase	E_val: 1.00E-88	ISS
UniRef100_B3TLP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ubiquitin fusion protein n=9 Tax=Spermatophyta RepID=B3TLP6_ELAGV	SoyBase	E_val: 1.00E-88	ISS

Expression Patterns of Glyma19g38170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38170

Paralog	Evidence	Comments
Glyma03g35540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g195500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g38170

Limit To All Plant Sequences

>Glyma19g38170.2   sequence type=transcript   gene model=Glyma19g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGAACAGCAAGCCCTGGCTGGGCTCAGTATTGAGCAGTGAAATTGAAACCCTAGAAAGGATAGTATAAAATCGCTGGGTTGCAGGGTTAGCATTTGTTGTGTGAGTGAAGAAGCAGAGGGAGTAGCGGCATTAAAAATGCAGATCTTCGTGAAAACTCTGACAGGGAAGACTATAACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAAGATGGAAGGACCCTGGCCGATTACAACATCCAGAAGGAATCAACCCTTCATCTCGTCCTCAGGCTTCGTGGTGGCATCATTGAGCCTTCCCTCATGGCTTTGGCTCGCAAATACAACCAGGACAAGATGATTTGCCGCAAGTATGCACTCTATCGTCTTTTGTTTTTTATATCATCTTTTATGGGACAATAACTTAGCCCCTTTTGCTTCTCAAGTGGAAAAGGGGTTATTCTTGCTCCCTATATTCATGTCCATCTCTACTTTGTCTACTGTGATTGTTTACTCGCAGTTGATTTTCTATGGTTGGTACATTCTAGTTTTGTTCCTAATTATTATTGATTAGGGTTTAGGGTTTACTTAAGCTTAATTTATTTTTTGTGTTTTGTATTGGATATTTTTTTATTGCTATTTGTTTGTGTTAAGCCGCTGCTTGCTTTTTATTGAGGTGTGTTGGTTTTGGTTTGTTAGGTGCTATGCCCGTCTGCATCCTAGGGCTGTGAACTGCCGCAAGAAAAAGTGCGGTCATAGTAACCAGGTGGGTTTACATTTGATGTTAAATTTTATCATTTTTATTATTTCGCTTAATGGTTAAAAATTTGATTGGGTTTGAACGTTGTTTCCTTCTTGCAGTTGAGGCCTAAGAAGAAGATCAAGTGAATTCTGTGTGATATTGTTGGTCTCATCCTTCGTGTTGTTGGATTTGGAACAGGGACTGGTTTGATATTTATAGTTCTGGTTTTGATTAATGTTAATTGTTTTGAGACAATAGTTTTGAAGTAGCCAATTATATTGTTATGACGACATTTTGATCTCTCGTAAGTTGTATTTCATGTTTTTGCAATGTTCTCTTATCTCACCTCCTGCAGTAAATTTTTTTAAGAAAGCAGTAGGTATATAATTTCATAAACTATCAATCCTTCAAGTATTATTCTCTCTTCTAAACAAATCCTTAAAGTTGTG

Coding sequences of Glyma19g38170

Limit To All Plant Sequences

>Glyma19g38170.1   sequence type=CDS   gene model=Glyma19g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATCTTCGTGAAAACTCTGACAGGGAAGACTATAACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAAGATGGAAGGACCCTGGCCGATTACAACATCCAGAAGGAATCAACCCTTCATCTCGTCCTCAGGCTTCGTGGTGGCATCATTGAGCCTTCCCTCATGGCTTTGGCTCGCAAATACAACCAGGACAAGATGATTTGCCGCAAGTGCTATGCCCGTCTGCATCCTAGGGCTGTGAACTGCCGCAAGAAAAAGTGCGGTCATAGTAACCAGTTGAGGCCTAAGAAGAAGATCAAGTGA

>Glyma19g38170.2   sequence type=CDS   gene model=Glyma19g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATCTTCGTGAAAACTCTGACAGGGAAGACTATAACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAAGATGGAAGGACCCTGGCCGATTACAACATCCAGAAGGAATCAACCCTTCATCTCGTCCTCAGGCTTCGTGGTGGCATCATTGAGCCTTCCCTCATGGCTTTGGCTCGCAAATACAACCAGGACAAGATGATTTGCCGCAAGTATGCACTCTATCGTCTTTTGTTTTTTATATCATCTTTTATGGGACAATAA

Predicted protein sequences of Glyma19g38170

Limit To All Plant Sequences

>Glyma19g38170.1   sequence type=predicted peptide   gene model=Glyma19g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK*

>Glyma19g38170.2   sequence type=predicted peptide   gene model=Glyma19g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKYALYRLLFFISSFMGQ*

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