Glyma19g38160 - SoyBase

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Report for Sequence Feature Glyma19g38160

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45148143
stop:	45153052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52600	AT	Annotation by Michelle Graham. TAIR10: cell wall invertase 2 \| chr3:19507080-19509273 REVERSE LENGTH=590	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
KOG0228	KOG	Beta-fructofuranosidase (invertase)	JGI		ISS
PF00251	PFAM	Glycosyl hydrolases family 32 N-terminal domain	JGI		ISS
PF08244	PFAM	Glycosyl hydrolases family 32 C terminal	JGI		ISS
UniRef100_Q2HTE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-fructofuranosidase, insoluble isoenzyme n=1 Tax=Medicago truncatula RepID=Q2HTE2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E17C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E17C related cluster n=1 Tax=unknown RepID=UPI000233E17C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38160

Paralog	Evidence	Comments
Glyma03g35520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g195400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g38160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38160

Limit To All Plant Sequences

>Glyma19g38160.1   sequence type=CDS   gene model=Glyma19g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTTCCAAAGTGTCGCTATATCACTGTAGTGTTTTTTGCCTTTGTTGTGTTACTGATCAACAATGGCGTTGAAGCTTTTCATAAAGTATATCCTCATCTTCAATCTGTTTCAACGATTTCCGTGAGCAGACAACACAGAACTGCATACCATTTCCAACCTCCTAAGAACTGGATCAACGGACCCATGTACTACAATGGAATCTATCATTTATTCTACCAATACAACCCCAAAGGCTCAGTGTGGGGTAACATTGTGTGGGCCCACTCAATATCAAAGGATCTCATCAATTGGAGGACCCTTGAACCTGCCCTATATCCATCCAAACCATTTGACAAGTTTGGTTGTTGGTCTGGGTCAGCCACCATAGTCCCAGGTAAAGGACCTGTGATCCTCTACACCGGAGTTGTTGACGACAAACAAACTCAGGTTCAATGCTACGCCGTACCCGAAGACCTAAATGACCCACTCCTCCGAAAATGGGTTAAACCTGACAAATTCAACCCGATCTTGGTTGCTAACAAAGGTGTTAATGGTAGTGCCTTTCGCGACCCAACCACGGCATGGTGGAGCAAGGATGGACACTGGAAGATATTGGTGGGTAGTAGAAGGAAGCGTAGAGGTATAGCTTATTTGTACAGAAGCAAGGACTTTATGACTTGGGTTCAAGCCAAACATCCGATCCATTCCAAGGGTGAGACAGGTATGTGGGAGTGTCCTGATTTTTATCCAGTTTTGGTTAATGGCAATCAAGGATTGGAGACGTCCGAGGGAGGGAATCATGTGAAGCACGTGTTTAAGAATAGTCTTGACATGACTAGGTTCGACTACTACACCGTAGGAACATATTTTGAAGATAAGGATAGATATGTCCCAGATAACACTTCAGTGGATGGTTGGGGTGGACTTAGGTATGACTATGGTAATTTCTATGCTTCAAAATCGTTTTTTGACCCCAGTAAGAACAGAAGGATCTTGTGGGGTTGGGCAAACGAGTCTGATACCAAGGAAGATGATGTTCGCAAAGGATGGGCAGGAATTCAGGCAATTCCGCGAACTGTGTGGCTCGATTCTACTGGGAGACAATTGGTGCAATGGCCTGTTGAAGAATTAAATAATCTCAGAGGGAAAGAAGTTAATATGAACAGTCAAAAGCTTCAAAAGGGAGATTACGTTGAAGTAAAAGGAATCACCGCTGCCCAGGCAGATGTGGAAGTTACATTCTCATTTGCAAGCTTGGACAAGGCAGAGACATATGATCCTAAGTGGGTAAATGCACAGGACCTCTGTGCCCAAAAGGGTTCAAAACTTCAAGGTGGGGTTGGACCATTTGGGCTTCTCACATTAGCTTCTCAAAATTTGGAGGAGTTCACTCCTGTGTTTTTTAGAATTTTCAAAGGTCCAGTTAAGCATGTGGTTCTCTTATGCTCCGATGCAACAAGTTCCTCTTTGAAGAGTAATATGTACAAGCCATCATTTGCTGGCTTTGTAGATGTGGATTTGGCCACTAATAAAAAACTCTCTCTTAGGAGTTTGATTGATCACTCAGTAGTGGAGAGTTTTGGTGAAGGAGGGAAGACAAACATTTTGTCTCGGGTTTATCCACAGTTAGCAGTGGCTAATCAAGGTCACTTGTTTGTGTTCAACAACGGAACTGAACCCATCTCGGTGGAAAACCTCAAAGCATGGAGCATGAAGCCGGCTGATATAAAATAA

Predicted protein sequences of Glyma19g38160

Limit To All Plant Sequences

>Glyma19g38160.1   sequence type=predicted peptide   gene model=Glyma19g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLPKCRYITVVFFAFVVLLINNGVEAFHKVYPHLQSVSTISVSRQHRTAYHFQPPKNWINGPMYYNGIYHLFYQYNPKGSVWGNIVWAHSISKDLINWRTLEPALYPSKPFDKFGCWSGSATIVPGKGPVILYTGVVDDKQTQVQCYAVPEDLNDPLLRKWVKPDKFNPILVANKGVNGSAFRDPTTAWWSKDGHWKILVGSRRKRRGIAYLYRSKDFMTWVQAKHPIHSKGETGMWECPDFYPVLVNGNQGLETSEGGNHVKHVFKNSLDMTRFDYYTVGTYFEDKDRYVPDNTSVDGWGGLRYDYGNFYASKSFFDPSKNRRILWGWANESDTKEDDVRKGWAGIQAIPRTVWLDSTGRQLVQWPVEELNNLRGKEVNMNSQKLQKGDYVEVKGITAAQADVEVTFSFASLDKAETYDPKWVNAQDLCAQKGSKLQGGVGPFGLLTLASQNLEEFTPVFFRIFKGPVKHVVLLCSDATSSSLKSNMYKPSFAGFVDVDLATNKKLSLRSLIDHSVVESFGEGGKTNILSRVYPQLAVANQGHLFVFNNGTEPISVENLKAWSMKPADIK*

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